1. Home
  2. Mutant Lines
  3. 54-0048-1

54-0048-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24064658 [Map]; Strand: w
      • AT5G59730.1 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59730.2 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59732.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-0048-1 - 5-prime edge 
    CCGAGAAGAA CCTTCAGAGT CGACGATCGG ACTTTAACGA CAACGTATTG 
    GAGATTGTTA GCGAGGAAGA GATAAGACAA AGCAACGTCT TTATACGGCT 
    GAGCTTTACC AGTCGATTTT ACAAAGCGTG AGTAAAATCA CCCAAGCGAT 
    ACNGTACAGA GACCGGAGAC GAATACAAAT CCTCCGGATT CGCCTCATCG 
    CCGCCGCTGA TGTATAAAGA ATCCGGCAAC GGAGTCGGCA CACTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24064542 [Map]; Strand: w
      • AT5G59730.1 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59730.2 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59732.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-0048-1 - 3-prime edge 
    CTTCTCGGAG ACGATTGGGT GTTTAGGCAC GAAGAGAAGG TGAAGCTCTA 
    TGCTGATAAG TTTGAGAAGC T

AT5G59730.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H7
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H7 (EXO70H7); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H6 (TAIR:AT1G07725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59730.2

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H7
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H7 (EXO70H7); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H6 (TAIR:AT1G07725.1); Has 772 Blast hits to 760 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 5; Plants - 633; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59732.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G59730
Link
InterPro Scan - TAIR