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53-4565-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185126 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -612; Region: promoter
    Flanking Genome Sequence: 53-4565-1 - 5-prime edge 
    CTTTTCCATT GACTTTTTGT CGACCCCAAA TTTTGACCTT TAAGTACTTT 
    TTCGGGCATT TTCGTGATTT GGGCTATATT ACGGACCCAA AATTACTTGT 
    TCAAGCATTG TTTTCGAATT TTTTCATGCA TCAAACTCGT TAAGACTAGA 
    TGGGGTATCC CTACATAGCG GGTGGGACCC ACGGCGAATG GTTCATCAAG 
    TCTTCAAAAA AGAATATATA CGATTGCATT GCATATACTA ACGGATGCGA 
    TCATACCAGC ACTAATGCAC TGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185010 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -496; Region: promoter
    2. Chromosome: 5; Position: 11186516 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2002; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4027; Region: intergenic
    3. Chromosome: 5; Position: 11187019 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2505; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3524; Region: intergenic
    4. Chromosome: 5; Position: 11187521 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -3007; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3022; Region: intergenic
    Flanking Genome Sequence: 53-4565-1 - 3-prime edge 
    TGGAAAAGTT CCATTGTCCT GCTTCTTTCG TCGGAGGGCT GTCTTTGGGC 
    TTTCCGAAAA GGTATCACAT GCCAAGTTTG GCCTCACGGT CTAAAAGTTA 
    TGGAGTCATA AAGTTTTAAC CAAAAAAAAA ANGGTTAANC NTAAAAAAGG 
    GATNCANCCC NAGGACTTCC CGGGNGGNNN CCCNTCCTAN NNCTACTTTC 
    NCCNAACCCC CCTNAACTGG GGANTTNTNA NGGNATCNCC ACCCCGGNCC 
    GTGAACCANC GNGGCCCCCT TAAAANNTNN CCANNGCANN NNNTTNTNTT 
    TTTTTTTNAA AACTTGATAA ACCNTTCCCC GGGGGTCCCN CCCNNTTTGT 
    NGGGATNCCC CATNTANNTT NAACNACCTT TNNTNCNTNA AAAAATNNNA 
    AAACANTGCT TNANNAANNA ATTTNGGGNC CNNNNTTTNN CCCAANTNNN 
    NAAANNNCCC NAAAANNNNC TNAANGGNNA AAATTNGGGG NNNNCAAAAN 
    NNNNNNGNAA AANNNCNNTN NNCCNNNTTN TTTNNNNNNN GGGNNNNNTT 
    NGGNNTTNNN NAAANGGNNN NNNNNNC

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR