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53-4546-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 51416 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -3066; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 7289; Region: intergenic
    2. Chromosome: 2; Position: 54397 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -6047; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 4308; Region: intergenic
    Flanking Genome Sequence: 53-4546-1 - 5-prime edge
    ATTCCGTGGA TAGGTTACAC GCCACGCAGT TCGTCGGAAT CTTCCTGGAA 
    ATTGATTTCA AAGTCGACTG GTTTTGTAAC TTTTGACCAG TGTTTCGTCT
    TGCTGTATCT GCTGGAGAGA AGCGCATGTA ACNTTTCGGC ACATAGCTTC
    GATTGGAACA ATATGGACTA TATGGAGAGC TGTCTGTCTG GGCAATCTGT
    GGATATGTTT CCTGTCTCTT GGTTCGCGGG TCGTACAATG TCGGAAAATT
    GCTCACGAAG TTGGTCGTTT GCAAGTGGTG TCAGTCTGAA TTGTCTTGGA
    AAAACGATCA TAACTCTCAA ACCATAACCT CAAATCGTGA TCCGCTTTTT
    TCTGTGGCTT CGTGTGACTG TTGCTGATTA TTCCAGAAAA TATCGTAATT
    TTCCGAGTTG TTTTGTTGCT CCATTGGCGA TCAGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 51300 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -2950; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 7405; Region: intergenic
    2. Chromosome: 2; Position: 54281 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -5931; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 4424; Region: intergenic
    Flanking Genome Sequence: 53-4546-1 - 3-prime edge
    CACGGAATGC CCCGAAAATT AGCTTTCAAA AGAAGCCAAT CTCGCCTCAA 
    TCAGAAATTT ACACTGAAGG TTATGACTCT TTCTTTGCAA CAGATGCAAC
    CAGCGAAACG CAGATCCTCA CTGCACGATC AACCAAATTA GAAAGCAAAT
    TTCTAGCAAT CCAAAAGAAT TTTCATGGCG ATCTGCATAT CAATTTGAAG
    CCCCGAGGCT CAGCTTTCTA GAAAGACCAA CCTACACCTT AACGTCGAAT
    TNCNCANNNA GNNNTGACAN NATTNCGGCC CTCTGCTGCA AGGTAATCAC
    TATTTGATAA GAACGACTCT TCATAGACGA ACAATGCAAC TCTACCTTTG
    GAACAGCAAT TCTGAGCTCA GCCTCTCGCC ATTTCTTCTC CCATCAAGAT
    AAGTATTCGT GCTTTACATT TTTTGATTGT TGAAGTCAAG CTCTAAATTG
    AGTCCCGACT CAAAAAGCT

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR