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53-4339-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108711 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -100; Region: promoter
    Flanking Genome Sequence: 53-4339-1 - 5-prime edge 
    TTTCTAATCA TGTCTCTCTC TGTTTTCTTC TTATTCTTCT ATCAAACCGT 
    CAAGTTGGGA AACAAAACAA AACTCGCAAG TTTAACAACG CGTCTTCTAC 
    CTCCTCCTCA TCGGACTATT TATCTATAGT CTTCGTTAGA TCAATTCCTC 
    TGTTTTACTC CTAAGTTTCG AGATCCACAT TTCTTTTTAA CCTCATCTCA 
    TCTCTTAGTC GAGATCTTCA CTTTCTGATG ACAATAGGGT CGTTTTTCTC 
    TTCTCTCTTA TTCTGGCGCA ATTCTCAGGT AACCTCAATC GACTATTCTC 
    TGTTCTACTC CTTTTTTCTT TATCATTTTA AAAATCCTAA CATTGAAAAT 
    AAAGTAGTTA AATAGAGTCA ACGAAAACAT TGTTAATGAA ACAGTGGTGT 
    GCTTAGCATA ACGAATCAGA CAGACAAAAA GTGTCTGGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108827 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -24; Region: promoter
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -216; Region: promoter
    Flanking Genome Sequence: 53-4339-1 - 3-prime edge 
    ATTAGAAACT CCTCTTCCTC TTGAATTTTG ACTTTTGACT TTTCAGTTAT 
    CGCCGGTCTG ATATGGCCTT CGTCTTTCTT CTCAGCCGCG TAGGTCCCAC 
    TTTTTAGGAA GGTTCGGAAA TCCAAGCCCG TAAGTATATT TCTCTGTGGG 
    CTTACCTTAC TTATTAGGCC TTATTATGGG CCTTCCCTGC TCGTTTTGTC 
    ACATGATCCA GTTTTCAAAC TACATAGGGG GTTTATAATT TCTTTTTTGG 
    ACTTAACTAT TTACTAATAT GTATCCATTA CACACATATC CAGAGCCAGC 
    CCATATCTAA AGCCCAGCAA ATAGAATATA TAACTTTTTA GAATACAACA 
    AATTTGTGTA AAAATAGGAA AGAATCCAAA AATGGAACTT ATTGAGGAAG 
    AAAGTGGAAA CTACTGTTTG TGGGTGCCAA ATAGAAGATG AAGTAAGTAA 
    GTACATAATG AGGTCGAAAA GTCACAAGTC TAAAGTCTTT GTCTGTTTTT 
    TATTTTATTT TGGAGAGTGC ATGGCAACTT GCTCCGACGT GAGAGATGCT 
    TGAGGACTCG GAACCTTTCT TTGTTTATTG TAAAACGAAA TTTCAGAAAG 
    AAAAAAAAAG ATGATGATGA CTTGGACGTT CAAATTATCT NGCTTTTNTG 
    GACTGACAAT TTTGGTGGAA CTAAAATAAG GGTTTATGGA GCNCNCANTT 
    ANACCTTTTN TNATAT

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR