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Mutant Lines
53-4229-1

53-4229-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 22478312 [Map]; Strand: w
- AT5G55480.1 - [+] show detail - SHV3-like 1
  Distance: 180; Region: intergenic
- AT5G55490.1 - [+] show detail - gamete expressed protein 1
  Distance: 400; Region: intergenic

GATGAAGCTC TTGTCTGGAC TGGGTTTAAC AACGAAGACA GAGATCTTGT 
GGGGATGTTT CTTCGTGATC ATTGGTTCTG TTTCCTTCTT CGGATTCGTC 
ATTGCAGTCG TGTCGTCGAA TGATAGGCAC TATTGCTTCT TGATTCCATT 
GACTCTACCA GTTATAATGG TTGCTGTCTA CTTTCATTGG CTTAGCATGA 
AGCTCTTCAA GCATGCTTGA TATATCCATC GATCACCATT TTAAGGATCT 
ATTGTGAGTT TCAATTTCAC TCTCTCTTGA CAATTCATTA CTGTATGTAA 
CAGAAAAGCT ATGGATGTGG ATTTCTTGAT TAAATTGAGA CAACTTTGTT 
ATCAAAGTAG ATTTGTTTAA CTTTAGTGAT TACTGCAAAA TTATGTTTGT 
TTTTTTTTNG TAAAANGAGT TNTCAGTNTN TAAATGAAAA NCTTGTNTTA 
CACGTAGGGA CTGGTTACTC TCAATTAAAT CTTCCAAAGC ATATGGTTNC 
NTTATTGCAA AAACTATAGC ATATAATTNT NGTTTNGATC CAAATACAAN 
GGNGAAGTTN CCCTAANAAA CATATATGAC TAATGTAGTT NCNACTTTGA 
GTGAAAAACT TTGGGGGCTN TNGGGGACGG GAAATTATNC AATNTTNTAN 
TCAATGATNA ANTANNAACC GGATTGTCTT TGATNANNAN GGGGATTTTN 
NAANNAGGAT NNC

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 22478196 [Map]; Strand: w
  - AT5G55480.1 - [+] show detail - SHV3-like 1
    Distance: 64; Region: intergenic
  - AT5G55490.1 - [+] show detail - gamete expressed protein 1
    Distance: 516; Region: intergenic
Flanking Genome Sequence: 53-4229-1 - 3-prime edge
```
GCTTCATCGA CAGATCTGAA TCATCTCGAG AAAGTTGTCA AGTTTGTTGA 
ATTATCACGT ACTTGGGCTT TAAACTAAAG CCCATTTTAG TTAATTTGGA 
TC
```

AT5G55480.1

Model type: Protein coding
Short Description: SHV3-like 1
Curator Summary: Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.
Computational Description: SHV3-like 1 (SVL1); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: trichome differentiation, cell wall pectin metabolic process, glycerol metabolic process, guard cell morphogenesis, plant-type cell wall cellulose metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterase family protein (TAIR:AT4G26690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G55490.1

Model type: Protein coding
Short Description: gamete expressed protein 1
Curator Summary: Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.
Computational Description: gamete expressed protein 1 (GEX1); Has 7985 Blast hits to 6093 proteins in 809 species: Archae - 118; Bacteria - 1642; Metazoa - 3258; Fungi - 589; Plants - 254; Viruses - 18; Other Eukaryotes - 2106 (source: NCBI BLink).
Link: InterPro Scan - TAIR