1. Home
  2. Mutant Lines
  3. 53-4140-1

53-4140-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 701494 [Map]; Strand: w
      • AT2G02570.1 - [+] show detail - nucleic acid binding;RNA binding
        Distance: -577; Region: promoter
      • AT2G02570.3 - [+] show detail - nucleic acid binding;RNA binding
        Distance: -577; Region: promoter
      • AT2G02570.4 - [+] show detail - nucleic acid binding;RNA binding
        Distance: -577; Region: promoter
      • AT2G02570.2 - [+] show detail - nucleic acid binding;RNA binding
        Distance: -577; Region: promoter
      • AT2G02580.1 - [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 9
        Distance: -452; Region: promoter
    Flanking Genome Sequence: 53-4140-1 - 3-prime edge 
    GTCTCCACTA CACAAACAAA ATTTATAAAT TTCAACAATT ATGTAATAAG 
    TTTTTGGGTT AAATATTGCC TTTTAAAATA AACTTAGTCG TATATCTTAG 
    CACCACATGT AAATATAGTA GGGGAATAAA ATTAATAAAT TTCAACAATT 
    ATGTAATAAG TTTTTGGGTT AAATATCGCA ATTTTAAAAA AAGCT

AT2G02570.1

Model type
Protein coding
Short Description
nucleic acid binding;RNA binding
Computational Description
nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02570.2

Model type
Protein coding
Short Description
nucleic acid binding;RNA binding
Computational Description
nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02570.3

Model type
Protein coding
Short Description
nucleic acid binding;RNA binding
Computational Description
nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02570.4

Model type
Protein coding
Short Description
nucleic acid binding;RNA binding
Computational Description
nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02580.1

Model type
Protein coding
Short Description
cytochrome P450, family 71, subfamily B, polypeptide 9
Curator Summary
member of CYP71B
Computational Description
"cytochrome P450, family 71, subfamily B, polypeptide 9" (CYP71B9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 36 (TAIR:AT3G26320.1); Has 32361 Blast hits to 32060 proteins in 1656 species: Archae - 50; Bacteria - 3047; Metazoa - 11845; Fungi - 6869; Plants - 9493; Viruses - 3; Other Eukaryotes - 1054 (source: NCBI BLink).
Link
InterPro Scan - TAIR