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53-3978-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33352 [Map]; Strand: w
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -448; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -739; Region: promoter
    Flanking Genome Sequence: 53-3978-1 - 5-prime edge 
    AATAAGAGAC AGCGTGAACC AGTTGAGTCT AGCCATAGCG GAGCTAGACA 
    GAGTCAGCAG GAGACAGGGA AAGAGCCAAG GGGATCTACA CTGGCATATA 
    AATAACCTGC AGACGTGGAC AAGCACAGCT CTTACAGACG CCGAGACTTG 
    CGTGAGCCAG TTCCCGGGAC GTAGGATGAG CAAACTTAAG GCTACGATTA 
    AAGGAAAAGT GAAGAATGTG GAGGAAACAA CTAGTAATGC CCTTGCCTTC 
    ATCGAGCACT ACGCTGCTGC TAGGTACCGA GCCAGACGTC CTTAAGCTGA 
    GCCTGTGTGT GTGTTTTGAT CATTTTGCCT TAAATTTCTT CTTACTTCTT 
    GATATTTGTG TGTGTAATTG TTAACCAGTC GTGTAAATCC AAAAGTTCAT 
    ATATGACCGT AAATTGATAT AATTCAATAA CAAGGAAAGT TCTAAGCCTA 
    AAACAAGCAA GAAAATACCT TTGCCGTATA CAAAGATTAT TAGCATTATT 
    ATCGACATCA CAGAATGTAG CCCGTCTAGC TCAGTTGGTA GAGCGCAAGG 
    CTCTTAACCT TGTGGTCGTG GGTTCGAGCC CCACGGTGGG CGATAGTGTT 
    TTTTCTGTTG TTTTTGTAAA GAGCTGAAGT TATAAATGGG CTTTGAAATT 
    AATGGGTTCG AACACCAACG GTGGGCCTTT TTTTCTTTCT ATTTTTGTAA 
    AG

AT4G00080.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 574 Blast hits to 571 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR