1. Home
  2. Mutant Lines
  3. 53-3854-1

53-3854-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24788520 [Map]; Strand: c
      • AT5G61680.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -505; Region: promoter
    Flanking Genome Sequence: 53-3854-1 - 5-prime edge 
    CNGGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCTTGTT TAGTAATACG ACTATACATA AATAGAACCT 
    TGATTGAAAA ATATAGTCAA GGATATGAAG ATATCCTACT AACAATAGTC 
    GCTGAAGTTG ATTTTATAGC GATTTATGCC TAATTCACAA TACTATTTGG 
    GATATCTTAA CGCCATGTTC GGTTTAGATG TTTAGTATTG AGAAGTTTCT 
    TGTTTAGTAA TATAGCATTA GCTAATCATT TGTTCCAAAA ATAAAACTAA 
    CGTCGGTTTT ACACCTTAAA GTAAATTAGT TTTCTAGACA AATAAACTAA 
    ATTAGTTAGA TTGAAACACT TAAAACAGTA CATAATATAT ATAGAGTTTA 
    TTAAGGGATT AAAATGAATA AAAAGTGAAG AACCAGAAAC CAATTTAGCA 
    AAAATTAACG GCAACGGGTA TTCTTCGCTT TTAGAGATGG TATAGATATA 
    TATACCATAA GAAAGGAAGA AGCAGAAAGT TAATCATCTT TACTTTAGAA 
    AAGTAGTAAC ANATATTAAT AGTACAATGG GATACAATTA TGTGTCCCTN 
    ATAGTAACAA TCCTGCTCGT GGTGATTACA TCGCCCGTGG TTTTCGGTNN 
    NNCNNANTNC CNNNNNCCCC NTTTTNCGGG NNAAANAAAA NGNGNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24788520 [Map]; Strand: c
      • AT5G61680.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -505; Region: promoter
    Flanking Genome Sequence: 53-3854-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TTCACATTAA CTATGATTGT AATACCCTAG CTACCTCTCT GTGTATATAC 
    GACTGTACAT AAATATAACA TTGATTGATA TAGTCAAAGA TATGAAGATG 
    TCGTAATACA ATTGTTAGGA ACTTCATAGT TCATTTGATC AAAAATAGTG 
    TTATTTTTTA TTCAACCAAA AAAAAGTATG TTTACATCAT ATGCAAGTTG 
    CAACCTTGGA TAAAATTCAA AGCTGAAAAG AAAATAGAAA GAGTTTGAAA 
    GTGAAAACAG GGCAATTTCT ATAGCCCGTC CTCTAGAATC AGATTGTCGT 
    GTCCCCTGAT GGAGCATAAT CTCTTGCGGA CTACACGATC AACGAGATTG 
    GCGACATATT CAGGAGGGTT CGGGACCTCA CTGTGTCGTC TAGAGTTGTG 
    CTCACACCGT GTGTTTTTTT TTTNGNCTTN AAANNNAANN NCCNTTTCCC 
    AAANTTTNAN NGGNTNNCCN NCCNGGNCCG NNANCCCGGG GNNCCNTTTT 
    AAA

AT5G61680.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G69940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR