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53-3554-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24793055 [Map]; Strand: c
      • AT5G61690.1 - [+] show detail - ABC2 homolog 15
        Distance: 0; Region: intron1 (CDS)
      • AT5G61700.1 - [+] show detail - ABC2 homolog 16
        Distance: -809; Region: promoter
    Flanking Genome Sequence: 53-3554-1 - 5-prime edge 
    CCAACAAGGT ATTACTTCAT TGGTTTCCCT TGGTTAAGTT TCTACGGTTA 
    TTTAATGTGT TGGATTCGAT GTTGTTCATC TAACCTCCGA CG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24805706 [Map]; Strand: c
      • AT5G61730.1 - [+] show detail - ABC2 homolog 11
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 53-3554-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATACT 
    GCAATGTTAG GATCAACTCT TCCATTCATT GCTTGTTGTT TAACTAAAAT 
    CTCCTCTTCA AGCACATCTT CGTCCTCTGG TGTAATATGC TCTACTGGTG 
    GAACTGAACC AATACAGCTA CAGATGCTCC CTTCTTCAAA AGTGTAGAAA 
    AACATGTTTT AACTTATAAT TAGTTTTATT TAGTGCAATA GAGAAAAATA 
    CCTTCCACTT TGTTGCCTTC TTTGCCAGTC CAATAACTAG GTTTTAGAAA 
    GTAGAAGATC GATTTTCTCA CACCGGATGC ATTGGGGATG ATGTTGTCAA 
    AGTAGAGAGC CAATACAAAC CAGAAAAAGA ACGTTCCCAC GAGCCATATG 
    TAGATTTTAT TCTGCCAAAA ACACAGTTTT GTCAGAGAAT GATACCTACA 
    CAACTATTGG ATC

AT5G61690.1

Model type
Protein coding
Short Description
ABC2 homolog 15
Curator Summary
member of ATH subfamily
Computational Description
ABC2 homolog 15 (ATH15); CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 11 (TAIR:AT5G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61700.1

Model type
Protein coding
Short Description
ABC2 homolog 16
Curator Summary
member of ATH subfamily
Computational Description
ABC2 homolog 16 (ATH16); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 14 (TAIR:AT5G61740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61730.1

Model type
Protein coding
Short Description
ABC2 homolog 11
Curator Summary
member of ATH subfamily
Computational Description
ABC2 homolog 11 (ATH11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 15 (TAIR:AT5G61690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR