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53-3519-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10330077 [Map]; Strand: w
      • AT5G28360.1 - [+] show detail - ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyc...
        Distance: -375; Region: promoter
    Flanking Genome Sequence: 53-3519-2 - 5-prime edge 
    GGAACTGTTA TATGGCCAAA AAAAAGTCTT ATTAATATTT ATGAGTATCT 
    ATAATCAACA AATGAACAAA CATTTAATTT CTGTAACTGA AAATTATAGT 
    TTTGATATAA AAATAAATAA GAATTAATGA TGATAAACAA CCTGTAGATT 
    CTTTTAGACA CACCTGTACC ATGCAGATGG TACATTTGAA GATTTAAGAA 
    CTTTATATAC TATGAAAAAC ATTGTAAAAC AAAGTATACT TTGTGTTAAA 
    AATACAGCCG CGACTTGGTA TCACGGTAAT AACTAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22766086 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -356; Region: promoter
    Flanking Genome Sequence: 53-3519-2 - 3-prime edge 
    GGAACTGTTA TATGGCCAAA AAAAAGTCTT ATTAATATTT ATGAGTATCT 
    ATAATCAACA AATGAACAAA CATTTAATTT CTGTAACTGA AAATTATAGT 
    TTTGATATAA AAATAAATAA GAATTAATGA TGATAAACAA CCTGTAGATT 
    CTTTTAGACA CACCTGTACC ATGCAGATGG TACATTTGAA GATTTAAGAA 
    CTTTATATAC TATGAAAAAC ATTGTAAAAC AAAGTATACT TTGTGTTAAA 
    AATACAGCCG CGACTTGGTA TCACGGTAAT AACTAAGTAC TAATTACATT 
    AAAAAGACTT TGTGTTTCAT TAATTTTAGT TAAACAATTA GATCAAGCAA 
    GAGGTTTTAC AGACAAAAAC AAATTAAAAG TCGAGAGTGT TTTAAAGATT 
    CAACGGAGTA ACAAATTAAC AAGTTCAAGT CTTACGAACT CTATTATTAG 
    ACCCACGTTG ACATAAGATT CGGGGGGAGA TTGTTGATTC TGAAAATCAC 
    ACAATAAATT TGTTTAAAGG GGGTAAACAA ATTTACTTAA CTCTCTCTCG 
    CTATTTAGTG ACCAAAGATT CAATGAAAAG AAGAACAAGG TTGCTTAGAG 
    ACAAAGTTAG GGTTTTGCCC AAGAACAATG AAGAAACCTA GGGTTTTTAG 
    TAATAAATTT CGGATC

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28360.1

Model type
Pseudogene
Short Description
ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups
Curator Summary
a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.
Computational Description
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE (ACS3); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: biosynthetic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 826 Blast hits to 826 proteins in 226 species: Archae - 2; Bacteria - 146; Metazoa - 60; Fungi - 54; Plants - 536; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR