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Mutant Lines
53-3513-1

53-3513-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 23539696 [Map]; Strand: c
- AT5G58160.1 - [+] show detail - actin binding
  Distance: 231; Region: intergenic
- AT5G58170.1 - [+] show detail - SHV3-like 5
  Distance: 353; Region: intergenic

GTTTTAAACA AGTGAATGAG GTAAATAAAG TGACATTTGC TTATTGAGAT 
TGACCAAACA TGTGGTATAC TAATGTATTT ATGTTTATTG CTTTCTAATT 
ACAATTTTAT TTTATACCCC TCCCTATTTT ACAAGTTAGC TTTGCCGTTA 
AAGAGATAAA ATATTGTTGT CCTTAGCATC CCACTCCCTG TTGTTCCATG 
GTCTAAAGCC AGTTTTACGC ACGGCTTCAC CGGGTGCTTT TTCTTCTCAA 
AGCCCGTTCG GTCTTAGACC ATTTCCATAT AGAAAACGGT ACAGCCGGTC 
ATTCAAGGAG CGGTTCTTTC CTTTAGTCGG TCACTCATTT CTTTACCTAA 
TCCACTTGTT TTTGTTTTCT CCTCCTTAAC TTCTTCATTT AAGGGCTTCT 
TGATTTCTGT ATCTAATCCA CCTGTTTTTG GTTTCTCCTT TTCAGCAGCA 
TTCTTCTTAG CTTCTGCCTC GAGTTGTTTT CCGTTTTCTT CAT

3 prime edge [+] show sequence

Chromosome: 5; Position: 23539812 [Map]; Strand: c
- AT5G58160.1 - [+] show detail - actin binding
  Distance: 347; Region: intergenic
- AT5G58170.1 - [+] show detail - SHV3-like 5
  Distance: 237; Region: intergenic

TTTAAAACTG TGAAAGAGGC AAGATGCGAT TTTTGCATAT ATGTAAATCT 
TTTTTTCTCC TACAGCAGCT ACTTTATCAC TAGGGAAATT ATGATTTCAT 
GCTTTTTAAA TTCCCAAGTG AGTGAGTGTA TTTTTCTATT GTGATCCAAT 
TACTCAGCAC AACTGTATTT TAAACCTACG GTGATTTGAG TTTTGATATC 
TTATTCTTCT TTTTTCTTTT GCAGCTTCAC TATCTTGAGA GAGCATTAGA 
TGCAGAAAAA CGTTGTGGAG AAGGTTTGTC ACGATAATAG AAAAAGATAT 
AAAATANGAA TTGGTAGATT ATCAAGATTC CAATTTCTGA GCTAATCAAC 
ACCCCGACAC AACAAGGAAG GCTTCTTTAG AGCTTTG

AT5G58160.1

Model type: Protein coding
Short Description: actin binding
Computational Description: actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (Formin Homology) protein (TAIR:AT2G25050.1); Has 66030 Blast hits to 44960 proteins in 1807 species: Archae - 80; Bacteria - 11670; Metazoa - 27723; Fungi - 9802; Plants - 6854; Viruses - 1874; Other Eukaryotes - 8027 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58170.1

Model type: Protein coding
Short Description: SHV3-like 5
Computational Description: SHV3-like 5 (SVL5); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 4 (TAIR:AT5G58050.1); Has 2139 Blast hits to 1578 proteins in 572 species: Archae - 0; Bacteria - 1688; Metazoa - 15; Fungi - 4; Plants - 324; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Link: InterPro Scan - TAIR