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53-3394-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22972467 [Map]; Strand: w
      • AT5G56795.1 - [+] show detail - metallothionein 1B
        Distance: -18; Region: promoter
      • AT5G56800.1 - [+] show detail - Protein with RNI-like/FBD-like domains
        Distance: -522; Region: promoter
    Flanking Genome Sequence: 53-3394-1 - 5-prime edge 
    TTACTGCAAG AGTCACCACA TTTGCAGGAG GAGCCACATC CACAATTAGA 
    ATCATCCTGG TTAGAATCAG TCCCATTTCT CTTACTTGTC TTTGATTGAT 
    TAACTTCTGT AGTTTCAACC AATGGGAATG GCCACTATTT ATAGAAGAAG 
    AGAGAGATTC GGATCACTTT ATACATAATC CAAATAAATT TACGAATAAC 
    ATCAACTTGC CCATCATTTT CTTTTTATGT TAGATTTGTT CCAGCTTCAT 
    TCAAGAAAGT AATTTAATGT TTTAATGAGT TTTTGCAAGA CAACAGAGTA 
    TCAAACAAAC TAATAGAAAA CGTCAAATTA TTGGCGAATA TGTAAAAAAC 
    AAAAAAAGTC GTACACGCAA GAAGAGTAAC TATCGCAATT GCCAATAGTA 
    AACGGCAGCC GACCCAAAAA AGAGGCAGGA AAACTTATTT AATGAGAAAT 
    ATTTTCCTCT GTTTTGAAAT CTTCTTGTGG TCATTTGGAC GACGACCCAG 
    GACATGGTCT ACGCTCTTCT ACTACTTATT AATATTACAT ATGAGTTTCT 
    TACGATCCAT ATAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22972306 [Map]; Strand: w
      • AT5G56795.1 - [+] show detail - metallothionein 1B
        Distance: 0; Region: intron1 (CDS)
      • AT5G56800.1 - [+] show detail - Protein with RNI-like/FBD-like domains
        Distance: -683; Region: promoter
    Flanking Genome Sequence: 53-3394-1 - 3-prime edge 
    TGATCCTCTC TCTCGTCTTT ACCTTTAATG GCTTCATGGT ACAAAATTCA 
    ATAAACTCTT CTTATGACTT ACGTTTACAA TTGTGTTAGT GAGTAGACAC 
    AAAAACATTT TGGCCTGTTC TGCATATATG CTTGATCAGA ATCAGATGCA 
    TGTGGTTGAC TAATCTTTAA TCTCATCATA TTAATTACTA ATTTTTTTGT 
    TTGTTTGATT AATTTGTGTG TGGTATAGTT GCGAGAAGAA CTACAACAAG 
    GAGTGCGACA ACTGTAGCTG TGGGTCAAAC TGTAACTTTT GATGAAATTA 
    TTATGGTCTA AAATCATATA TATGGCAGAA AAATTGGGGA AAATATGTGT 
    TTTATGCTAA GAGATGTGTG T

AT5G56795.1

Model type
Protein coding
Short Description
metallothionein 1B
Curator Summary
one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance. The MT1b gene, however, is indicated to be inactive.
Computational Description
metallothionein 1B (MT1B); FUNCTIONS IN: metal ion binding; INVOLVED IN: response to metal ion; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56800.1

Model type
Protein coding
Short Description
Protein with RNI-like/FBD-like domains
Computational Description
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT5G56560.1); Has 758 Blast hits to 735 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR