1. Home
  2. Mutant Lines
  3. 53-3379-1

53-3379-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26017843 [Map]; Strand: w
      • AT5G65130.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3379-1 - 5-prime edge 
    GCTGAGATTC GGCTACCTAA AAACCGAACC CGGTTATGGC TCGGTACGTT 
    CGAAACGGCT CAAGAAGCTG CATTAGCTTA CGATCAAGCA GCTCATAAGA 
    TCAGAGGAGA CAACGCTCGT CTCAATTTCC CAGACATTGT TCGTCAAGGA 
    CACTATAAAC AGATATTGTC TCCGTCTATC AACGCAAAGA TCGAATCCAT 
    CTGCAATAGT TCTGATCTTC CACTGCCTCA GATCGAGAAA CAGAACAAAA 
    CAGAGGAGGT GCTCTCTGGT TTTTCCAAAC CGGAGAAAGA ACCGGAATTT 
    GGGGAGATAT ACGGATGCGG ATACTCGGGC TCATCTCCTG AGTCGGATAT 
    AACGTTGTTG GATTTCTCAA GCGACTGTGT GAAAGAAGAT GAGAGTTTCT 
    TGATGGGTTT GCACAAGTAT CCTTCTTTGG AGATTGATTG GGACGCTATA 
    GAGAAACTCT TCTGAATCCA TTTTATCTTT TTGATTCA

AT5G65130.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR