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53-3339-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 201392 [Map]; Strand: c
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 2813; Region: intergenic
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -1024; Region: intergenic
    Flanking Genome Sequence: 53-3339-1 - 5-prime edge 
    CTCGACCCTG ATGAGAGAAA CTCGAAGAAC CCCGAGATTC GACGAATCAA 
    GGGAGAGATT TGGTAAACGA AAACAGAACC AAAGCTTGGA ACTTTATAGA 
    AATTGAGGGT TTTCCAATAA AGGGGAAATC TAGAGCGCNG AGAGAGATTC 
    AGAGAGGANG AAGAAGCAAT AAATAACAAG GCCCAGAAGA AGAAGAAGAA 
    GCAAAGAAGA GTCTTGGGCT TTGTTAAAGT TTGACTCTTT TCTTTTTCAA 
    TCTCTTCTCT TGTGCACTTT TTTGGTGTAA TGAGGACAAC GAATGCTCTC 
    TCTCTCTGCT GTGTAAAAAC AATTCCTTTA TCTGCAGATT TTTGTGATTC 
    CGTAGTTTGG GATGTGAAAA TAGTTATCGT GTGCTCTGAG GAAAGAAGAA 
    GAAGGAAGAG AACAAACACC AAACAAAGAC CAAATAGAAG AAGAAGAATC 
    GAATAGAAGC AGAGAAGCAA CAACAACAAC AAACTCTCTT TTTTTTGCGA 
    TTGATCGATC GAATTTCGAT CTAACACACA CTGTTCTGGT AAGAAAATCT 
    TAACCTTTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 201508 [Map]; Strand: c
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -908; Region: promoter
    Flanking Genome Sequence: 53-3339-1 - 3-prime edge 
    GGGTCGAGGT CGAATCCGCG GAATTTCCTG TCAAAACCCT AACTTTGATT 
    CGACTCCGGA TTGTGGGGTC ATCTCGAGCT CCTATTGGTT AGTTTTCGAT 
    TTGAAACCCT AACTTTTACT TATTTTATCG TACNGGATTA ATATTTGTTT 
    GCGTAGTTCG ATTTGGTATA TTTGATGATC ATGGTGATTG TTTTCTAGCT 
    CAGAAAAGGA TTTAGTTTTA GCAGATTTTT GTTTGCTTCT ATCTGGATTT 
    GTTCATCTC

AT4G00440.3

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00450.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Curator Summary
Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.
Computational Description
CENTER CITY (CCT); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: photoperiodism, flowering, regulation of development, heterochronic, regulation of radial pattern formation; LOCATED IN: mediator complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med12 (InterPro:IPR019035); Has 216 Blast hits to 184 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 65; Plants - 86; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR