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53-3235-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10330668 [Map]; Strand: c
      • AT5G28360.1 - [+] show detail - ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyc...
        Distance: -966; Region: promoter
    Flanking Genome Sequence: 53-3235-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA CGGNATTACC ATTCTCTCTA CATGATTTTC 
    TTCCTCTTAA ACTAAGNTTA NAATGGAGAA AGACAAAATT TGAAATTTTA 
    TTTTCACGTG ATTAGACCAT GATTACGTTT CGGTCGACAC GCAAGTAATT 
    TTAAAACTTA AAACATATGA TTTGAAAAAG GTAAAACACC AAGTCATGGT 
    AAACATCTCC CCCCGAATCT TATATCAACG TGGGTCTAAT AATAGAGTTC 
    GTAAGACTTG AACTTGTTAA TTTGTTACTC CGTTGAATCT TTAAAACACT 
    CTCGACTTTT AATTTGTTTT TGTCTGTAAA ACCTCTTGCT TGATCTAATT 
    GTTTAACTAA AATTAATGAA ACACAAAGTC TTTTTAATGT AATTAGTACT 
    TAGTTATTAC CGTGATACCA AGTCGCGGCT GTATTTTTAA CACAAAGTAT 
    ACTTTGTCTT ACAATGTTTT TCATAGTATA TAAAGTTCTT AAATTTTCAA 
    ATGTACCATC TGCATGGTAC AGGTGTGTCT AAAAAAATCT ACAGTTGTTT 
    ATCATCATTA ATTCTTATTT ATTTTTATAT CAAAACTATA ATTTTTAGTT 
    ACAGAAATTA AATGTTTGTT CATTTGTTGA TTATAGATAC TCATAAATAT 
    TAATAAGACT TTTTTTTGGC CATATAACAG TTCCGTTGTA AAAAAAAAAT 
    GTTATAATTG GCATAAATGA ANAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22766748 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -1018; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 2169; Region: intergenic
    Flanking Genome Sequence: 53-3235-1 - 3-prime edge 
    AATCAGGGTT GGTCGTTGGG TTTAGCTCCA AAGAGTTCTT CAAGGTCATT 
    CATTATGTTT ATAGTAATCC AACAAAATTA ACATGTGAAA AAGTATTGAC 
    ACGTGGAGCA GCCCACTGAA TTGGCGATCA AAGATCTTTT TGGGCNGGCT 
    TTCTAGATTT ACGACATAGT AAAACTCTCT CTACATTAAT CTTTGCCTTA 
    GATTGAATTG GTCGGAGATC GAAAAGACTA AAACTAGATG GACACGCTGT 
    ATGTATCTAA GTGGAGTGAT TACTCGTTTT CTTAGAGTGT ATTTGTAGGG 
    AAAAAGAATA CGTATACGCA CGTACAGTTG TTAGGGGTCG GATTGGGCCT 
    ACTTGGCCCA ATGCCCAAAC CCA

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28360.1

Model type
Pseudogene
Short Description
ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups
Curator Summary
a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.
Computational Description
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE (ACS3); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: biosynthetic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 826 Blast hits to 826 proteins in 226 species: Archae - 2; Bacteria - 146; Metazoa - 60; Fungi - 54; Plants - 536; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR