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53-3072-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1954314 [Map]; Strand: w
      • AT3G06410.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -4525; Region: intergenic
      • AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 676; Region: intergenic
    Flanking Genome Sequence: 53-3072-1 - 5-prime edge 
    GGNGACACAA NGNTCNNGAC NGTACGAGNA TGTGATNNGN NCAGCGNAGG 
    ATCACGAGNT CGGGGNCCTG ACAGACNACG CCTAGNCGNT AGANAATAAG 
    GTACCANNAC NTNGGGAAGT GANACACACN CNTGCNCTNT AAAGGAATAA 
    CCNGAATCTA TATACAAATG AAATGAAAGA GCACAAAAAT TCCAAAAAGA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7807712 [Map]; Strand: c
      • AT1G22120.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 53-3072-1 - 3-prime edge 
    GTTGTAATTG TCAAACTCGG AGGCATAACA CTTTGAATTC TCCTCGGCCT 
    AATAAAGTAA ATAATGTAAT ACATAATTTT TCAATAGATC ATATGGAAAA 
    GTTAAGCAAA ACATGTATAG GGTAAGACAA TGATGTCACC TTCCACGGGG 
    CCGGCGAGTA GGGTTTAACG AGCTTGATTT TTGGAAGGCA TAAGCAAATG 
    AGTCAGGCTG ATATGACCTA TGCGTAAATG GTGAGTAATT TCCTGTCCTG 
    TAAACATTCG AAACTCTTCA TTTGTAAGTA ATTTAATAAT TAGAATGTAT 
    ATAAGCAACT AAACAAAAGT AAAATCACTT TTTATATACT TCGTTAGTGT 
    AAGATTATTA CTCTGGATGC GTCAAAATAG TTGGAGTCGA TGCAAAAGGA 
    CTTAGGCATT GATTGTTTAG CAGTGTCCCC CTATAATTGG ACAAAAGATT 
    AAACACAATT AAGTTTCACT ACACTGGATA AATCAATTTT TAAACAATCA 
    AAGTAATAAA TTTCTTACAC TGATGTTGGG GTACTAGACA TGTTTGTGAA 
    CTTTGGTAGT TGCATTTGAT GTTCANTTTC ATGAATACNC ATGATTTGTT 
    CAAGTANTGA GTCNGNGTGA TTATATTGNN NCTTNTNATA CCANCCCNGG 
    CCNTNNACCA CNCNTGNNNN NNNNAAAAAA AAAANNNNAA A

AT1G22120.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06410.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 3128 Blast hits to 1576 proteins in 227 species: Archae - 0; Bacteria - 85; Metazoa - 789; Fungi - 248; Plants - 1012; Viruses - 7; Other Eukaryotes - 987 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06420.1

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Link
InterPro Scan - TAIR