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53-3041-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 126644 [Map]; Strand: w
      • AT2G01220.2 - [+] show detail - Nucleotidylyl transferase superfamily protein
        Distance: 178; Region: intergenic
      • AT2G01240.1 - [+] show detail - Reticulon family protein
        Distance: 1796; Region: intergenic
    Flanking Genome Sequence: 53-3041-1 - 5-prime edge 
    ATGTACGAAA ATGCTATCAC CACAAATGAA TATTAATGCA TTACATTGTG 
    CTCCAGTTTT TCATTGTTGT TATTGGGTTT TTCCAATATA TGTAGGCCTA 
    AAGTCATATG GAAACTAATC TCAATGGATA CCTTGGAAAG TATAAAAGTC 
    GGCCCAATAG TGAAGTGCGT GATTTGTTGA ATTACAAAAC GCAAGTCGTT 
    TACCCACTCG CATAATAAGC GCGTCGACGC CACCTCCCCG AAATCTGTGG 
    ACTAACCCAT GCAGAAATTT GCCGTTTTTC GTAAAATTTT AAAAGTGGGC 
    GCGTGTGGGT CGTTTTAGTT TGAGGTGAGG AAAAAAGAAG AAGTAAACTT 
    GCATTTGATC GGATCTCTTC TCAACTTTTT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4889561 [Map]; Strand: w
      • AT2G12160.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -629; Region: promoter
    Flanking Genome Sequence: 53-3041-1 - 3-prime edge 
    GCAGCTTAAA CTGTTATATT TGCAGAGACC TGTGAAATAA CCAGCACAAT 
    CTGATCATTT GGCACTATTA CATTATTTTC AATAGCCCTA ATTATAGGTA 
    GAATCCTGGA TAGTATAATG ACAGTCGTAA ATACCTAACA AGGCTTCTCT 
    GTCACAATTC ACAAATATTC GCACTCTTTA AACGCTTCCC AGGCAACTCT 
    GCAATGCTCT TTCGATGTCA TCTGTGCAAA TGCTCATACC ATTGATCCGG 
    ATTCCATAAT AAGAACAGAA TGCAACACAA TACTGATAGA CTTTAGTATT 
    ATGAATCTCA ATGTAAATAC TGGATTAAAG CCTATCTTTC ATAAAGTTCC 
    ATAGATTAAT AAAGACTCTC AAGGTTTAGG AATTACAAGG AATGAACAAT 
    CAAAACAAAT GAAGAACGAG ACTAGATTCT CGGCATCTCT TCGAATATAT 
    TCTCTCCATA CGATAGTCTC ATAGCGACTA ATCCTCCACT TGATTCAACA 
    TGTCTTTCCC CCAAAGCCAC CTCTCCTTAT TTATACGCAA CAATCCCAAA 
    GCACAACCTT AACCCTTCAT ACGTGTGATC CA

AT2G01220.2

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.1); Has 429 Blast hits to 422 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 76; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01240.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 2 (TAIR:AT4G11220.1); Has 375 Blast hits to 375 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G12160.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR