1. Home
  2. Mutant Lines
  3. 53-2996-1

53-2996-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 174212 [Map]; Strand: w
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: -59; Region: promoter
    Flanking Genome Sequence: 53-2996-1 - 5-prime edge 
    GGTTGCAGGT GAAAGTCAAC ATGTACATGT TTAATCTAGG CCCATTAAAT 
    ATGAGGCCTA TACTGTTTTT AAGCCCATTA CTCATCATTT TTTATTATTA 
    TATTTAATTT AATTTCTTCA TTTTATTGAC ATTTCTGATA GATTAGCGGT 
    TGCTACNTGA CGCCGGAGAA GAGAGATGGC GAGATCGTGC TCTATCTGGA 
    CACCTGTTTT GATCTCACTT TCACCTGTGA CCGGAGAATC ACCTAAAATT 
    TCACGGCGCC GGGTGATTTT AGCCACAAGT ATAGGATCTC CTCAGGTTCG 
    TACAAGTACA ACAGCTTTCG AAGATCCATA TAGTTAGTTT TCTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 174086 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: -185; Region: promoter
    Flanking Genome Sequence: 53-2996-1 - 3-prime edge 
    ATTACAACAG ATTTGTAGCA AACAGAAGAT CACATATTTT GTCTTCAACA 
    TGAACAATTT CCCGGAAACG TGTAGAAGCA ACAAGACTCT TTTTCTCCTT 
    CCTCAATGAC GATGTTTCTC TCTGGAAATC ACTGGTTTTC TCAAGACCAG 
    ACAATAGAAC ATTGTATGTC CCCAGCGAAG GCATTATCTC TCGCTCTCTC 
    ATCTCTCCTA ATATCTTCAT TGCTTTCTCT GGACTCCCTG CTGAGATATA 
    AACATCCAGC AGCGCAGTAT AAGCAGCTAA ACCCTTTTGA TCATCCGGAA 
    GTAAGTCGAA AACCTCTGCA GCTAAACGAG GTCTTCTCCC AAACCCGAGC 
    CTGTGGATCA ACATTGCTCC TTGGTAACAA CCAAGCGAGT GTTGGGCTTT 
    CAGCAGCTCC TTGACCACTT CAATCACTTT AGGAAGCTCG TTTGATCTCA 
    GAAAATTACC AATTAACGCG AGATACGCTG ACTTCTCGAG ATGAATT

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01400.1

Model type
Protein coding
Computational Description
unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR