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53-2778-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 460499 [Map]; Strand: w
      • AT4G01060.2 - [+] show detail - CAPRICE-like MYB3
        Distance: 0; Region: exon1 (5UTR)
      • AT4G01060.3 - [+] show detail - CAPRICE-like MYB3
        Distance: 0; Region: exon1 (5UTR)
      • AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
        Distance: -32; Region: promoter
    Flanking Genome Sequence: 53-2778-1 - 5-prime edge 
    CNNGATAAAC TAACAAAATC GGTTATACGA TAACGNCCAN NTCNNGNTAA 
    NTTCCCTTTC TNCTTNTNTT NTNNNNTACN GCGCNCGNAT GANANGGANA 
    NCCANCGANC GNCTANGGNG NCCAANACNA CCTACANGAG NANTANANNA 
    NCTCGNNGGA NGTNAGCATG ANNNCNNAGG CANACGANTN ACCANTNNNG 
    NNNGCAAGAC CNNTCTTGCA ACTATTTCTC TATATATAAT GAGAAAACTG 
    AATTTTGGTG GCGACAAGGA ACAGAAGTGA GTAGTCTTGA GTGGGAAGTT 
    GTGAACATGA GTCAAGAAGA AGAGGATTTG GTCTCTAGAA TGCATAAGCT 
    ACCANCCCGG GCCGTNGACC ACNCNTGCCC TATAGCTTTG GATNTNNTAN 
    CATGGATACA CTAATTAGGC NTATAANATN NNGTNGCGGN NCANGTTNTT 
    ATACTCAANC NTACNCNTGA CNTCNNGNNA TANNNGACTN CNANACACTN 
    ACCANCTNNN NCTTGNTNNT GANAGCTACC NNCCNGGGNC GANNNNCCTC 
    NTGNNCTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 460399 [Map]; Strand: w
      • AT4G01060.2 - [+] show detail - CAPRICE-like MYB3
        Distance: -73; Region: promoter
      • AT4G01060.3 - [+] show detail - CAPRICE-like MYB3
        Distance: -76; Region: promoter
      • AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
        Distance: -132; Region: promoter
    Flanking Genome Sequence: 53-2778-1 - 3-prime edge 
    CACACGAACC ATCATTTCTA TTTATAGCAA CTAACCAAAT CAAGTAACCA 
    ACGGTCCAAC GGGTTTGGTC GGTTTCTATG TTAATTTACT AAATTGGTTT 
    TGTTCTCATT AATTAAATTA ATTAATTGTT ATTGCAAGTT GCAAGTTTGC 
    AACCAATAAA AACCACAAGT ACCCGTGACT TCATTTACTA CGTTGTGATG 
    GCTTGGACTG GAACATAAGT TGTATAAATA TTGATACAAG CCGTTAATTA 
    AGATCATTAA TAATCAACAA CAATTGTTTT CAAAGCTTTT CTGATTGCTA 
    TTCCAGTTCA TTCAATCAGA AATTGTACTC CCTTTGTTCA TAATAGATTG 
    AAATTTTGGA TATATTAAGA AACAATCATT TTTAATTATT TTAACATTAC 
    TTTTTGTATC AAACATTTTT CAATGCCTAA GAAAAACTTA CAAAACTATT 
    GTCCTCATGT ACGTTTGTAA AACACAATAA TATTTTCAAC CATTC

AT4G01060.1

Model type
Protein coding
Short Description
CAPRICE-like MYB3
Curator Summary
Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description
CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 2727 Blast hits to 2727 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2715; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01060.2

Model type
Protein coding
Short Description
CAPRICE-like MYB3
Curator Summary
Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description
CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01060.3

Model type
Protein coding
Short Description
CAPRICE-like MYB3
Curator Summary
Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description
CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR