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53-2678-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71783 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-2678-1 - 5-prime edge 
    NCAACAAGAC AACTACTCAA TGTGTCGCTT TTAAGGTCTT TTACATTCTC 
    TTCTTACAAT TCTGTCTTAT TAGTACACAT TGAGAGAGTG TTGATGTTAA 
    TTGAGAGACA CACAGGTTAA AACAACCAAT CCTCGCAAAT ACTGTGTTCG 
    TCCTAACACT GGTGTTGTCT TGCCCGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71899 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2678-1 - 3-prime edge 
    CTTGTTGGTC AATTGCATCG AACACGAACT TTGTTTCTTC AACTCAACTT 
    CTCACCACCA ACAACAACAC AAATTATAAC AGAGGTTACC CAAACAAACA 
    ACGACGGTTC AATTCGGAGA ATCGAAAACG TAAAAAAGGT GAAATGAATC 
    CGAGAGGGAT CAAATCAATC GGAAAAAAAA ANCTTNCAGG GGAATTTAAN 
    CTCAGTAGGA TGGATNTTAN CNNANATCTC CGGTCGTCNT GCTTNTTTGT 
    ANATCCTTCN ANATTGAAAT TNGATTTTTC TGTTTTTTTT TAGGGTTTNC 
    AACTGTGAAA AAAAAANTGA AANTCGANCA AATTTTGATT TTGGTCAAAA 
    AAAAAAAAAA GTGAATAAAT NTTTTTTTGA GCCAANACTG GTAAATTTTT 
    GGAGTTTTAA ATNTTAAATG GCCCCGTAAC TAGATTTGAC NATNNCCCGA 
    TTGACCCGGA TTTTTTTAAT GCGTTAGCGG GAAGCCCCAC AAAATCAAGG 
    NTNTTGTTCC CTGACTGAAA TAANCCCCAC NAAAAGGATT ACCANCCCGG 
    GGCCGNNAAC NCNGNNNCCN TTTTAAA

AT4G00170.1

Model type
Protein coding
Short Description
Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description
Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR