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53-2603-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33618 [Map]; Strand: w
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -182; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -473; Region: promoter
    Flanking Genome Sequence: 53-2603-1 - 5-prime edge 
    CTGCTAGGTA CCGAGCCAGA CGTCCTTAAG CTGAGCCTGT GTGTGTGTTT 
    TGATCATTTT GCCTTAAATT TCTTCTTACT TCTTGATATT TGTGTGTGTA 
    ATTGTTAACC AGTCGTGTAA ATCCAAAAGT TCATATATGA CCGTAAATTG 
    ATATAATTCA ATAACAAGGA AAGTTCTAAG CCTAAAACAA GCAAGAAAAT 
    ACCTTTGCCG TATACAAAGA TTATTAGCAT TATTATCGAC ATCACAGAAT 
    GTAGCCCGTC TAGCTCAGTT GGTAGAGCGC AAGGCTCTTA ACCTTGTGGT 
    CGTGGGTTCG AGCCCCACGG TGGGCGATAG TGTTTTTTCT GTTGTTTTTG 
    TAAAGAGCTG AAGTTATAAA TGGGCTTTGA AATTAATGGG TTCGAACACC 
    AACGGTGGGC CTTTTTTTCT TTCTATTTTT GTAAAGAGCT GAATTTTAAA 
    ATGGGCTTTG AAATTAATGG ATCAGTGAGG TTAAGGCCCA TATTTCTAAT 
    AAAATTAGAA GTAGTTACAA ACCCGACCCG ACCCGGTTAC GTGTATGCGG 
    AGATCACTCT CCTCTCCATA AGCTAAGCTC TAGAAACACC GCCTTTAACG 
    TCTCGCTGCA CCATTTTTCA TCGTTGATCA GTCGTCGATC CTCTTGAGTG 
    ATTTGATTTT AGACTTTCTA GTTATCAAAC TCGAAAGATG GATTCTGTCC 
    TTGTAGTGGG CATTGCATCG GT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33502 [Map]; Strand: w
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -298; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -589; Region: promoter
    Flanking Genome Sequence: 53-2603-1 - 3-prime edge 
    CCTAGCAGCA GCGTAGTGCT CGATGAAGGC AAGGGCATTA CTAGTTGTTT 
    CCTCCACATT CTTCACTTTT CCTTTAATCG TAGCCTTAAG TTTGCTCATC 
    CTACGTCCCG GGAACTGGCT CACGCAAGTC TCGGCGTCTG TAAGAGCTGT 
    GCTTGTCCAC GTCTGCAGGT TATTTATATG CCAGTGTAGA TCCCCTTGGC 
    TCTTTCCCTG TCTCCTGCTG ACTCTGTCTA GCTCCGCTAT GGCTAGACTC 
    AACTGGTTCA CGCTGTCTCT TATTTGGTCC AAGCAGTCGT GAACCGACGC 
    GTAGTATTGG GGCCTCAACG TCGTCTCCAA GTTCTTAACC TCTTTTAACA 
    AGAACGCCTT TGTGTACTTA GCTCTATATA GGCTGGCTTT GAGCGCAAAT 
    CGGGCCAGAT CCCGTGGATT TTGCACCGCG CGTGAACGCA CGTAACGAGA 
    CAT

AT4G00080.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 574 Blast hits to 571 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR