Home
Mutant Lines
53-2531-1

53-2531-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 24786370 [Map]; Strand: c
  - AT5G61670.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: chaperone protein dnaJ-related (T...
    Distance: 425; Region: intergenic
  - AT5G61680.1 - [+] show detail - Pectin lyase-like superfamily protein
    Distance: 46; Region: intergenic
Flanking Genome Sequence: 53-2531-1 - 5-prime edge
```
GGCTCTTGCC TCCTCCTTCT TTCTAATGTA ACTACCAAAT TAATCAACCA 
CTCCGTTTTA AATTACTATA TTTGGAAGAA GAAAAAAAAA CACAAAAACA 
TGTAACCT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 24786486 [Map]; Strand: c
- AT5G61680.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon5 (CDS)

CAAGAGCCAG CTAGATCCTT GGATGTAGCC AAGCGAGATG AAGTACTTAG 
CTTCTATGTC ATCAATGTCT TGTGTATACT TTACTCTCTT CTCCTTGTGC 
GATCCTGTTC CTGTGCACTT ATATTCTCCA TAGAACACCG TCCTGCTCAT 
CAATCAGTGC ATTTTACATT AAAACTTATG TCACATAGTT TTTGATTGAT 
ATACTATGGT TTGGACTTTG GACTATACAT ACTTGTCACG TCCGGCCTCG 
CGGTTTTCTT GCCATCCAGA TGGGTTCA

AT5G61670.2

Model type: Protein coding
Curator Summary: Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.
Computational Description: BEST Arabidopsis thaliana protein match is: chaperone protein dnaJ-related (TAIR:AT5G06130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G61680.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G69940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR