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53-2507-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24064341 [Map]; Strand: c
      • AT5G59730.1 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59730.2 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59732.1 - [+] show detail - other RNA
        Distance: -137; Region: promoter
    Flanking Genome Sequence: 53-2507-1 - 5-prime edge 
    CCGGAAACAG ACTTCGTGGG TTATACCCGA CCCGAAACTT AGGGACCAGA 
    TTAAAATCAC GTTGAGTCAG AAACTTATGC TGGTTTGTAC CGAGTTTTAC 
    CAGGATGAAC CGGTTTGCAT ATGGTATGGT TGGAGATAAT GAGGCTATTT 
    CCAGATATAC CCCTGAAGAT ATTGGGAATT ACCTCTCGGA TCTTTACTTT 
    GGGTCTAGAG GCTCAGGGAG TGTTTCGACA GCTGGTGGGT CTGGATCCGG 
    ATCCGGATCC GGAACTGGTT CGTCGAGTAC GGGTAAAGCT CGTGGCGGAC 
    GTAGTAGTCA TTGAATGAGA ATCTCGTGAT ATTAGTTTTT TTTTTTTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24793466 [Map]; Strand: c
      • AT5G61690.1 - [+] show detail - ABC2 homolog 15
        Distance: 0; Region: exon1 (CDS)
      • AT5G61700.1 - [+] show detail - ABC2 homolog 16
        Distance: -398; Region: promoter
    Flanking Genome Sequence: 53-2507-1 - 3-prime edge 
    GAAAGCAATA GATTCTTCCC GAACAACGCC GTGAACTGCT GGTAGAGAAG 
    CGGCAAGCCT TCTTGCAAAA TCATTATCAA GTTTTTAAAA AAAAAATCTT 
    TCTTTTTCCA AGTAAATNGT TNGTCTTAGG AAAAAAAAAN NCAAANTTTN 
    ANTTTTNAAN GTCCCCCCCC CCCCCCCAAA AAAG

AT5G59730.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H7
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H7 (EXO70H7); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H6 (TAIR:AT1G07725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59730.2

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H7
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H7 (EXO70H7); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H6 (TAIR:AT1G07725.1); Has 772 Blast hits to 760 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 5; Plants - 633; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59732.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G59730
Link
InterPro Scan - TAIR

AT5G61690.1

Model type
Protein coding
Short Description
ABC2 homolog 15
Curator Summary
member of ATH subfamily
Computational Description
ABC2 homolog 15 (ATH15); CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 11 (TAIR:AT5G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61700.1

Model type
Protein coding
Short Description
ABC2 homolog 16
Curator Summary
member of ATH subfamily
Computational Description
ABC2 homolog 16 (ATH16); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 14 (TAIR:AT5G61740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR