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53-2367-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23421165 [Map]; Strand: w
      • AT5G57800.1 - [+] show detail - Fatty acid hydroxylase superfamily
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-2367-1 - 5-prime edge 
    CCTACAAGCA ATAATAGTGA GCCTGATCTG TTACATGTCA CCACCATTGA 
    TGATGATGAT AAACAGTCTT CCTCTGTGGA ACACGAAAGG ACTCATCGCA 
    TTAATTGTGC TACATGTGAC TTTCTCAGAG CCTTTATACT ACTTTCTGCA 
    CAGATCTTTC CATCGTAACA ACTACTTCTT CACACATTAC CACTCTTTCC 
    ACCACTCATC TCCTGTTCCA CATCCCATGA CTGGTAATAA TAAGAATAAT 
    CTACCCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28129140 [Map]; Strand: w
      • AT1G74875.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2367-1 - 3-prime edge 
    CACAGAATGA CAGTTTCTGT TTCTCTAGAT TCTCTACCTG AAGACCTTCT 
    TGTAGAGATC TCTTCATGTG TTGCAGCTTC ATCATTATCC NAGTTTCGCA 
    ATCTTCAATT AGTTTCGAAA TCGTTTAAAC GTATCAGCAA CGATCGATAC 
    ATTCTGCAGC GGCTTTCCCT CAATAAAATC CCTCTTTTAC CATGGCGCAA 
    CCGTAAAAAA TTTCACAATT TTTTCAAAAG ATGTCGCAAG AGTGGAAACC 
    TAGAGGCTAT ATACCGTAAA GGACTTGTCG ATTACTTTCA TCGGGATAGT 
    CATGAACGTC AACGAGACAG AGGACTCAAA CATATAGCAA AAACTGCAAA 
    CAATGGAAAT CAAGAAGCAC AATATGTTTA TGGGTTGATC CTAATTTGTC 
    TTGGTGGCAA AACAAAACAA AATGGTTTCA AGATCTTGTC TTCTCTACGA 
    AAACCTTTGA TGTTGTCAAA TACGATCAAG GAGATGGAAA AACATCGGAC 
    ACATATCA

AT1G74875.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67623.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57800.1

Model type
Protein coding
Short Description
Fatty acid hydroxylase superfamily
Curator Summary
encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis.
Computational Description
ECERIFERUM 3 (CER3); FUNCTIONS IN: oxidoreductase activity, binding, iron ion binding, catalytic activity; INVOLVED IN: cuticle hydrocarbon biosynthetic process, response to salt stress, pollen sperm cell differentiation, wax biosynthetic process, cuticle development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02205.2); Has 879 Blast hits to 877 proteins in 232 species: Archae - 0; Bacteria - 279; Metazoa - 24; Fungi - 149; Plants - 340; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR