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53-2189-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75356 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2189-1 - 5-prime edge 
    TACAATGGCC TCTTCATCAC ATGTCGCCAA TTTGTTTAGG TACAGTGTCT 
    CTTCATATTT ACATAAATAG ATATCTCTCT CTCTCTCTCT CTCTAAACCA 
    CATCTTCCTC TCCACCGNTC TTTCTCTTCC TTCTCTCTCT GGACTTCAAC 
    TTCTGGAGAA GTACAAGACA TTTATAAAGT ACTGCTCATC ACCCAACACT 
    AAACACAATT GTCAAAAGGG TGTGGTGGAA GGAGAATCTA CTTCTATCTG 
    AACATCGATC AGNCATATCT TTTCAATCAA ATCAAAGCCC TCCTCTCTCT 
    CTNACTCCTT TTNTGTTNTA AATCAAGAAA AAGACTCCAT GTCGAGCATG 
    TCCATGTCGN CCTCCTCATC TCCAGCTTTT CCACCGGACC ACTTCTCATN 
    TACGGACCAG CTCTGTTACG TNCATTGCAG CTTNTGNGAC ACTGTCCTTG 
    CTGTATATNT GGATTATTCT TATATCTCAT CTCAATATTT CAAATATATA 
    ACTCTAGCTN GGGTTNCACA TGAATNACTA GTTAATTANT GTGNGATATT 
    AANTGGNGGG AGAGNGGNNC CCCCCCCCAA ANNNTTTNNN NNCCANAAAA 
    ANGGNGGGGG GGGGGNNNNA NNGNGGGGNC CCGGGNGGGN NAAANNCTTT 
    TTNNGGGGNN NNCGCGGANA AAAAAAAAAA NTTTTTTTTT TTNTNCGGNN 
    GNNNANCAAG GNGGGGGNGT TNTTTNTTNC CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75476 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -92; Region: promoter
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -92; Region: promoter
    Flanking Genome Sequence: 53-2189-1 - 3-prime edge 
    TGTAGAGATN AGCTGCATAC CTGCGTTCTC ATTTACTACC TTTTGAACCG 
    GTTTATCTTC TTTATTATTC CTATCCATCC TTTTTCTTTC TTCTATATAT 
    CANACCGGAA CTAGTCTTTG TTTCTATATA ATCAGATAAA AACTCTACTT 
    TGGGANTAAT TATCATTATC AAGTACCATT GAATTAGTAG CCGATCGGTG 
    AGGAATAATA GATATAAAGA TTTCAAAGTT TTATAACGAC AAGATTTGTG 
    CAGCATCAAA CATGTANATA CGACAAACAT GCTAACT

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR