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53-2180-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11800523 [Map]; Strand: c
      • AT1G32640.1 - [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2180-1 - 5-prime edge 
    ATTACAAAGG TGAAGAAGAT AAAGCAAACC CGAGACGGAG ATCGAGTTCG 
    CCGCCGTTTT CTACTCCGGC GGATCAGGAG TACAGGAAAA AAGTGTTGAG 
    AGAGCTTAAC TCGTTGATCT CCGGTGGTGT TGCTCCGTCG GATGACGCTG 
    TTGATGAGGA GGTGACGGAT ACGGAATGGT TTTTCTTGGT TTCNANNACG 
    CANAGCTTCG CTTGCGGTGC GGGATTAGCT GGTAAAGCGT TTGCAACGGG 
    TAACGCGGTT TGGGTTTCCG GGTCAGATCA ATTATCCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11800639 [Map]; Strand: c
      • AT1G32640.1 - [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2180-1 - 3-prime edge 
    TTTGTAATAA CCATCTCCCC ATCCGAGCAC GGAGGCGCCG GATAAATCAT 
    ACGACGGTNG CCAGAATATA GCGTAGGTCC AACCTTCGTG TGTTCCTTCA 
    ATCAAAGCTT GTAAACGTTG CTGAAGAGTC TCTTGATTAA ATCCCGCCTG 
    TGCCGGAATC TCCATCGCCG GCGTCGGAGT TGTTTCANTC GTCGCCGTCG 
    TGGTTGTCGT CGACGCCGGA GGCCATAAAG TTGAGATATC GGAAGAGCTC 
    ATGAAAGCTT CCATCATAGA ANCGTTGTCG TCGGTGGTCC AAAGATTCAT 
    CGTTGGTTGT AGCCGGTAAT CAGTCATTCC ATAAACCGGT GACCGGTA

AT1G32640.1

Model type
Protein coding
Short Description
Basic helix-loop-helix (bHLH) DNA-binding family protein
Curator Summary
Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light
Computational Description
MYC2; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 4078 Blast hits to 3762 proteins in 672 species: Archae - 2; Bacteria - 2; Metazoa - 761; Fungi - 108; Plants - 3150; Viruses - 25; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR