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53-2139-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4015252 [Map]; Strand: w
      • AT1G11900.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -571; Region: promoter
      • AT1G11905.1 - [+] show detail - B-cell receptor-associated protein 31-like
        Distance: 0; Region: intron1 (CDS)
      • AT1G11905.2 - [+] show detail - B-cell receptor-associated protein 31-like
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2139-1 - 5-prime edge 
    TAGTGAATCC TACAGATGAG GTTATCATGG CTAAGCATCT CCTTGAATCG 
    ACTCTTATGG GTAAGCTCCT TGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4015136 [Map]; Strand: w
      • AT1G11900.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -455; Region: promoter
      • AT1G11905.1 - [+] show detail - B-cell receptor-associated protein 31-like
        Distance: 0; Region: exon1 (CDS)
      • AT1G11905.2 - [+] show detail - B-cell receptor-associated protein 31-like
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2139-1 - 3-prime edge 
    ATTCACTACA CCATCTTCGA TCCAACGCTT CTGGATCCCC ATCATATTGT 
    ACACGCTCGT CACCAGAAGC ACAATAACCG TCGCAGAAAC CGTCTGAATC 
    ACCACCGGTC CACGACCACG CTTGGAACGA TCCAAGCTCA TGATCAACAG 
    CTTCCTAATC GGCGTCTTGA AGGAAAGCGC CATTATCACA ACAACCTCGA 
    AGAGAACAAC CGCGAAGAGT AATTGCTGCA TCGTCTTTCA TCTCACTCGA 
    CG

AT1G11900.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 30383 Blast hits to 10536 proteins in 259 species: Archae - 3; Bacteria - 11; Metazoa - 189; Fungi - 334; Plants - 28802; Viruses - 0; Other Eukaryotes - 1044 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11905.1

Model type
Protein coding
Short Description
B-cell receptor-associated protein 31-like
Computational Description
B-cell receptor-associated protein 31-like ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated 31-like (TAIR:AT5G42570.1); Has 277 Blast hits to 277 proteins in 61 species: Archae - 9; Bacteria - 14; Metazoa - 105; Fungi - 11; Plants - 130; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11905.2

Model type
Protein coding
Short Description
B-cell receptor-associated protein 31-like
Computational Description
B-cell receptor-associated protein 31-like ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated 31-like (TAIR:AT5G42570.1); Has 298 Blast hits to 298 proteins in 71 species: Archae - 7; Bacteria - 30; Metazoa - 108; Fungi - 11; Plants - 132; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR