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53-2109-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1462845 [Map]; Strand: w
      • AT1G05090.1 - [+] show detail - dentin sialophosphoprotein-related
        Distance: -357; Region: promoter
    Flanking Genome Sequence: 53-2109-1 - 5-prime edge 
    GGGNAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATAGGCC AATGGAAATC CTTGTTTCCA CGCAGGAGCT 
    TGTAGAAAGG GAGACATTTA TCAGTTGACC GGGCGATGAA GCGAATCAAA 
    GCTGCGATCC GACCTGTTAG CCTTTGTACT TCTCGTTTGT ACTTACCAAA 
    TTGAGTCAAA CAAAGGAATT TCAAAGAAGT AGTTTGGTAT GGACGGATCT 
    GGTAAACCGG TTTCGGTACG ATTGTCTGGT TATTTTTGGT TTAAAATTGA 
    TTGGGTATGT TGCAGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11031268 [Map]; Strand: w
      • AT4G20460.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2109-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGCT 
    CTTAAAAGAT TCATACCGTG TAACCATTGT GGTAAAGTTT CTTTCTTTGA 
    TGGTATTTGG CGATCCATTG GAAAAGTTGT CAAAACTGCA ATGTTTGGTT 
    TTGTAACGCT AATCACTTTG TCTCACAAAC AGGACAATCT TTCTCGGGGA 
    AATCTTGGGG CTGTCAAGGT TTTACAGGGA TTGTTCCCAG AACCCGGGAG 
    GCTTCAATTC ATTTATGCTG ACTTAGGAGA TGCCAAAGCT GTAATGCTTC 
    ATATCCCTAA GATTCTTTTG AGCATTTTTT TTCCTGGTAT ATTTTATGAA 
    GTATGAGTTT TGTTCATTTC AGGTTGATAA AATCTTCTCA GAGAACGCGT 
    TTGATGCTGT TATGCATTTT GCTGCAGTAG CATATGTTGG AGAGAGCACT 
    CTAGATCCTC TAAAGTACAA TCTCTAGCCA CTGTTTTGTT CATAAGACTT 
    CTCAAGATTG GAGTTCTTTG TGGTTAATCA ATCTCATGTC GATTTTCGTT 
    ATTTAGGTAT TACCACAACA TTACATCAAA CACATTAGTA GTTCTTGAAG 
    CTGTGGCTAG ACATAAAGTG AAGAAGTTGA TATATTCAAG CACATGTGCC 
    ACTTATGGAG AACCTGACAA GATGCCTATT GTTGAAGTTA CTCCACAGGT 
    ACTATTCTAA ACAGTTTCAN AAAACACTCT CTTTCGNNTA TGATCATGTC 
    TCCTCAAATT CGGAATTATC GATTTT

AT1G05090.1

Model type
Protein coding
Short Description
dentin sialophosphoprotein-related
Computational Description
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT4G20720.1); Has 3598 Blast hits to 1413 proteins in 251 species: Archae - 2; Bacteria - 2631; Metazoa - 338; Fungi - 185; Plants - 102; Viruses - 1; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20460.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity; INVOLVED IN: galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G30620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR