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Mutant Lines
53-2084-1

53-2084-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 26463908 [Map]; Strand: c
  - AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
    Distance: 0; Region: exon7 (3UTR)
  - AT5G66230.1 - [+] show detail - Chalcone-flavanone isomerase family protein
    Distance: 0; Region: exon3 (3UTR)
Flanking Genome Sequence: 53-2084-1 - 5-prime edge
```
AATCAGATTT GTGAATCTTC AAGCAACAAC AAGAAAAAAA AAAAAAAAAT 
TTNAAAAANT TNGGGGNTTT TTTTNCNCCC CCCCAAAAAA AAAANNCNAN 
NGGAANNNNN NCCCCCCNGG GAAATNNAAA TTTTTTCCCN NNGGGNNNGN 
NAAANCNTTT NAAANCCNNN CCCCCGGNAA AANNNTTTTG GGNCCCCAAA 
NTTNNTTTNN NNNNCCNA
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 23496647 [Map]; Strand: w
- AT5G58050.1 - [+] show detail - SHV3-like 4
  Distance: 0; Region: intron4 (CDS)

TGGAGGATGT NGTTGGAACC NGGCCNCCCA AGTTCTGGTT GNGCGTTCAG 
GTATCTCTTC ATCTCTTTGA NANCATGATT AACCAACATA TGGAGCTTTT 
TTGTTGATTC ATCAAAACAA CAAACAATGC AAATGTGCAG TACGATGCCT 
TCTACATGGA ACACAAGCTG ATNNNNNCCG AGTACCTGAG AAGCTTGCGA 
TTCCGCGGCA TTAATGTCAT CTCATCTCCA GAGATTGGTT TCTTGAAGAG 
CATCGGGATG GACGCGGGCA GGGCCAAGAC AAAGCTCATA TTTGAGTTCA 
AAGACCCCGA GGCAGTTGAG CCCACCACCA ACAAGAAGTA CAGCGAGATT 
CAGCAGAACT CGCAGCCATC AAGGCCTTTG CTTCAGGCGT TCTTGTGCCC 
AAAGACTACA T

AT5G58050.1

Model type: Protein coding
Short Description: SHV3-like 4
Computational Description: SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66230.1

Model type: Protein coding
Short Description: Chalcone-flavanone isomerase family protein
Computational Description: Chalcone-flavanone isomerase family protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66230.2

Model type: Protein coding
Short Description: Chalcone-flavanone isomerase family protein
Computational Description: Chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity, intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process, flavonoid biosynthetic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66220.1).
Link: InterPro Scan - TAIR