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53-2046-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18020735 [Map]; Strand: w
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2046-1 - 5-prime edge
    TGTGTAATAT ATGATCTCAG AACTAACAAG TAAGAAGAAG AAGAATGTCG 
    GAGAGTTTCA AAGTGTGCTT CTGTTGCAGC AGAAGCTTTA AGGAGAAAAC
    GAGGCAGCCA CCAGTGAGCA TCAAGAGACT CTTCGAAGCT TACTCAAGAA
    ACGGCAAGAT GTCTTTCGAT GAGCTTCTAA GATTTGTGGG TGAAGTCCAA
    GGAGAACGGC ACGCAGGGTT GGACTACGTG CAAGATATCT TCCACAGCGT
    TAAACACCAC AACGTTTTTC ATCACCATGG ACTTGTTCAT CTCAACGCCT
    TCTATCGCTA CCTCTTCAGC GATAC

AT4G38530.1

Model type
Protein coding
Short Description
phospholipase C1
Curator Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational Description
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR