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52-1152-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10336871 [Map]; Strand: c
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -2300; Region: intergenic
      • AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 1852; Region: intergenic
    Flanking Genome Sequence: 52-1152-1 - 5-prime edge 
    CTTTTGATCA GTGTTTCGTC TTGCTGTATC TGCTGGAGAG AAGCGCATGT 
    AACTTTCGGC ACATAGCTTC GATTGGAACA ATATTGGACT ATATGGAGAG 
    CTGTCTGTCT GGGCAATCTG TGGATATGTT TCCCGTCTCT TGGTTCGTCG 
    TACAATGTCG GAAAATTGCT CACGAAGTTG GTCGTTTGCA AGTGGTGTCA 
    GTCTGAATTG TCTTGGAAAA ACGATCATAA CTCTCAAACC ATAACCTCAA 
    ATCGTGATCC GCTTTTTTCT GTGGCTTCGT GTGACTGTTG CTGATTATTC 
    CAGAAAATAT CGTAATTTTC CGAGTTGTTT TGTTGCTCCA TTGGCGATCA 
    GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22766987 [Map]; Strand: w
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -1257; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1930; Region: intergenic
    Flanking Genome Sequence: 52-1152-1 - 3-prime edge 
    ATCAAAAGTT ACAAAACCGC CCAAAGATTA ATGTAGAGAT ACATTCCCTA 
    CAAATACACT CTAAGAAAAC GAGTAATCAC TCCACTTAGA TACATACAGC 
    GTGTCCATCT AGTTTTAGTC TTTTCGATCT CCGACCAATT CAATCTAAGG 
    CAAAGATTAA TGTAGAGAGA GTTTTACTAT GTCGTAAATC TAGAAAGCCG 
    CCCAAAAAGA TCTTTGATCG CCAATTCAGT GGGCTGCTCC ACGGGTCAAT 
    ACTTTTTCAC ATGTTAATTT TGTTGGATTA CTATAAACAT AATGAATGAC 
    CTTGAAGAAC TCTTTGGAGC TAAACCCAAC GACCAACCCA TTACGGCATT 
    ACCATTCTCT CTACATGATT TTCTTCCTCT TAAACTAATT TAAAATGGAG 
    AAAGACAAAA TTTGAAATTT TATTTTCACG TGATTAGACC ATGATTACGT 
    TTCGGTCGAC ACGCAAGTAA TTTTAAAACT TAAAACATAT GATTTGAAAA 
    AGGTAAAACA CCAAGTCATG GTAAACTGAT AACTTCCGTT TGAACCGTTT 
    CCGGAATTAG CACCTCCGAC AATACCGGCT TAAACCAGAG GAACTACGAA 
    TTAGACTGAG ATTTCAATCA AACCGGGGTA TCCCGGTTTA GCTTGTTAAT 
    GGGCCAAAAT AAGGAGGTCA TTTGCCGACT TTAGCCCGAA GTAGGGAGAC 
    CGTCTAG

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28370.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28380.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR