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52-1118-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 77692 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2308; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2741; Region: intergenic
    Flanking Genome Sequence: 52-1118-1 - 5-prime edge 
    CAAAGGACGA CTTAAATTGT AACGAAAAGA ATTTGAACTT TTTTCCATTA 
    GTCCCTACGA TGAATATTTC ATCCTATAGA ACATCATATG AATTGATTAC 
    TTAATGAAGT TAAATTTTTG AAAACTCTAT TAGGGACAAT GTCCCACATC 
    GGAAGTTGAG TGGGATCTTA AGTGGTATAT ATAAGATATG GGCCTCTTTA 
    CCTATTGCCA ATTAGTTTTA GGTTGGAAGC CCACAGTCTG ATATGATATC 
    AGAGCTCGAT CCGCACATAC TCAACCCGAT CCACATCGGT CCGGCTCAAT 
    ACTTGGCCCG CCGATCCATG CCCAAACATA TCGAGATCAA TGGCTAGAAG 
    CGCCATCATC TCGAGGGGGC GTATTAGGGA CAATATCCCA CATCGGAAGT 
    TGAATAGGAT CTTAAGTGGT ATATATAAAA TATGGGCCTC TTCACCTATT 
    GCCAATTGGT TTTAGGTTGG AAGCCCACAC TCTAATATGG TATCAGAGCC 
    CGATCCGCAC ATAGTCAACC CGATCCACAT CGGTCCGGCC CAATACTTGG 
    CCCGCCGATC CATGCCCAAA CATATCGAGA TCAATGACTA GAAGCGCCAT 
    CATCTCGANG GGGCGTATTA NGGACAATNT CCCACATCGG AAGTTGANTA 
    NGATCTTAAG TGGTATATAT AAGATATGGG CCTCTTCACC TATTGCCAAN 
    GGGTNTANGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 77808 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2424; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2625; Region: intergenic
    Flanking Genome Sequence: 52-1118-1 - 3-prime edge 
    GTCCTTTGCC ACTAAAAATA TCCTATATAT ACTCATAAAG TTTTGGAAAT 
    TTGTTTCAAT TCGTCTAGAA ATTATTGTTT GTAGAAAAAA GAAGTAAGGA 
    TATGAAATGA AATAAGATAA ACTATGAATG CAGAGAAAGA CAGAACATTA 
    AAATCGAGGA CGACACAAGG CGTCGAAGTT GACTAATTAT AAAAAGTAAT 
    TAATCGCGAA ATCATGTAAC GGAAATGAAA GCAAAAAAGT TGAACAAAGG 
    AGAAGCT

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR