Home
Mutant Lines
52-1026-1

52-1026-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 17717 [Map]; Strand: w
  - AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -75; Region: promoter
Flanking Genome Sequence: 52-1026-1 - 5-prime edge
```
CTACTCCACT AATGCNNGGA TCTTAATCAA ACCATATGAG AATGGACCTN 
AACAATTNAA TATATATGGT TAACTATTTA ANTATCATNT CCCCACTTGT 
CCACTACGTG ATTACTACAA AANTNCACAT AAAAGTCCCC CTTTTTTTTT 
TTTTGANANG GAAGAACATC TC
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 17600 [Map]; Strand: w
- AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -192; Region: promoter

TTGTTGACAG CTTAAATGTG AGAATCAATT CTGTATACGA CTCGCATGTA 
TATTTGTTGT CATACTTTAG TAGGATTCGC TAACATATTA TACTAGTTTT 
TATCCCGCGG TATAAATTNA ATTTGTTTAG TAGATTAAAA TATATATGAT 
TTAATGNTTN ATATTTTCTA AATGTACAAC TCTTATNTTT TATATATTAT 
TTACTGTNTA GTNACTTGTN TGATTTTTAC TATTTAAAGA TATAANAACA 
ATAACATACC GTCCATTAAG TTAAAATTTA GATTATAACC TAACTAATTT 
AAATTTAAAT TATATTTATT TTGTTAATAT TGTTTGTTTT GTATAGTGTT 
TAAGATAATA TAATTGTATT TTGATTGTTA TATATATATG ATTTCGCCCG 
TGGTATACCG TCTCGTATAC TATCGACTCA AACCCGTCCT ACAATCTAAT 
CTCGTTCAGT GAAATCAAAC ATATCTTATG GATTTCACCC ATGATATATC 
GTCTTGTATT TCTATCGACT CAAACCCGTC CTAACCATCT AAACCCGATC 
AATAAAATTA AATATTATTT TGTCATTTTT GTTTAATAAT ACTTTAATCG 
AAAAGATATA TAATTCAAAT CAATATAAAA GTTTTCTTTC AAATAGTTAT 
TTAATTGTTC TAAAGTTCAT ATTTNATAAT NTTCTAAACC CNGTCCCTAC 
CATCTATACC ATTCGGTGAA ATTAAACATT ATTTTTN

AT4G00050.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR