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52-0991-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10369123 [Map]; Strand: w
      • AT5G28440.1 - [+] show detail - unknown protein
        Distance: -806; Region: promoter
      • AT5G28442.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase,...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0991-1 - 5-prime edge
    CTCTCTACAA TGGATCTGAT TACAGATTCT GCTCATACAC AGAGATCATA 
    GGAACATTTG TTGGAAGAAG AAGAAGAAGA AGAAGAAGAA GGAGAAGAAG
    AAGAAGATGG ATCTCGCAGT CGCAGATCAA TAAACGGAGC ATCAAAATTG
    GAATTGCCCG ACCGGTTTAT GTTGATCGGA TTTTAATTTT GCGAATATAA
    TCGGTTTGGG TGATACGAAT CTAATTTTAT GAATAAACCG GGAATCAATT
    ATTGATTATC CTTGGCCTTC TCAACCCCAA TGCATTTCAA TTTTACGAAT
    CTAATCGGTT TTGGGGATAC GTTGATGTAA GCCCAAATCC AACAGAAACA
    GTTTCAGCCC ATCAAACAAT AATGACTAGA AATTGCCCAG ATTAATTTTC
    AGCTCATGCA TGTGTGTGAT TACATAATTG AAAACTCTAG TTTTCTTCTC
    TTTTTGTAGG TTGATTTTTT ATTTGTTTAA TAAATTTAAG AATTTAGTAA
    AGTAAACGTA TAGAACTAGT AAATTCGCCG ACAAAAAAAG AACTAGTAAA
    TTTTTATTAT AGTTTCTATA GATATTGTTT TTATAAGGGT ATAGATTAAA
    GTCTGTTCCG GACAAACTAT TGACTATCTC AAATTCTTAG TTAATTATTT
    TGATATAAGT CCAAAAAAAT AATCAATTAT GAATAAATCG GGAATCAATT
    ATGATTATCC T
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10320314 [Map]; Strand: c
      • AT5G28350.1 - [+] show detail - Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotid...
        Distance: 0; Region: exon1 (CDS)
      • AT5G28350.2 - [+] show detail - Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotid...
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 5; Position: 10369007 [Map]; Strand: w
      • AT5G28440.1 - [+] show detail - unknown protein
        Distance: -690; Region: promoter
      • AT5G28442.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase,...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0991-1 - 3-prime edge
    GTAGAGANAG ATAGCCATTT CAATTCGAGG TAGCCAAAGA TGTATATGGC 
    TTACGGGTGG CCGCAGGTGA TCCCGCTTCT ACCTGGATCG TNTCCGTNTA
    CNNCTCNAAT CCTGNACCNT AAGCTCGCNG GCCGGCTA

AT5G28350.1

Model type
Protein coding
Short Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor
Computational Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28350.2

Model type
Protein coding
Short Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor
Computational Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28440.1

Model type
Transposable element gene
Short Description
unknown protein
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28350.2); Has 26 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28442.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT5G28350.1).
Link
InterPro Scan - TAIR