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52-0943-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11121745 [Map]; Strand: w
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: -1150; Region: intergenic
      • AT4G20740.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -4406; Region: intergenic
    Flanking Genome Sequence: 52-0943-1 - 5-prime edge 
    TTTTCTNGCN CGCCTTAAAA CGAAATCGGG CCACGAAAAC GGTCGGTACG 
    GGATTTTCCC ATCCTACTTT CATNTGATAC TATCCTTCTT GTANCGTAAT 
    TATAATAAAG ACCCACCTNA GACCTAACCA CCTTAGACTG CTGAATTCTT 
    TGTGCACTAN AAGAANAAAT ANAAGTNAAA AAAAAANG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16240540 [Map]; Strand: c
      • AT5G40545.1 - [+] show detail - pre-tRNA
        Distance: -831; Region: promoter
      • AT5G40550.2 - [+] show detail - SGF29 tudor-like domain
        Distance: -469; Region: promoter
      • AT5G40550.1 - [+] show detail - SGF29 tudor-like domain
        Distance: -528; Region: promoter
    Flanking Genome Sequence: 52-0943-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCCAAAT 
    CCAAAATCCT TAAAACTCGC GTATATTTTT TCTTACTTTT TCTCAATGTT 
    TCTTCGAAAA AGAATAACAA ACTTATAAAT TTATAACATT TCTTGTAAAA 
    TTTCAAACTA CATTATATTA TAGAGCCAAC ATTTGAATCA ACNTTCAATG 
    CATTTTAAAT ATTTTCTAGT ATATGACTAT ATGTAGATTT GTTTATGGTG 
    CAGTCATCTA AAACTATTCG TTGTATTTCC AGTTAACACC AGAAAAAAAA 
    AGAAACTTAA ATTCGTTCAT CATCTTACAG TAGGATGGTA TTAAGAAAAA 
    AATACACAAA GTTAAGACTT CAAACCCAAA AAATATTTTA AACATGTTGT 
    AAACTTGTAA TAAGTTTTAC AATTTAAAAA CATTTTCCCT TTATGGGCTT 
    TTATTATCCA ATAAATGCCA AAGCAGCTTC TTCTTCTTCG TCCCAAACGA 
    TGTCGTATTC TTCTTGACCT ACGAATCACA TTTCCTTTTT TACCCCAAAA 
    AAACCCTGAA ATCTTTTTAT TTAAAGAAAA AAATCTGANA ACTGAAAAAT 
    CTAACCTTTT TTTTTGTTGG ATTTACCAGC TGCAGANATC AAAAACTTCG 
    NGATTCATTC GAACAATCTA ATTTACCAGC TGCAGAGATC AAAAACTTNG 
    NGATTCATTC GAACAATCTA ATTCANATTT ATTATTGGGG CTGGGTATCT 
    TTTTCTTACC ATATTTTTTG TTNCCTNGTA AAACNATTGG TTGGNAATG

AT4G20730.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR

AT4G20740.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G06710.1); Has 37034 Blast hits to 11477 proteins in 267 species: Archae - 10; Bacteria - 18; Metazoa - 245; Fungi - 473; Plants - 35231; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G40545.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asp (anticodon: GTC)
Link
InterPro Scan - TAIR

AT5G40550.1

Model type
Protein coding
Short Description
SGF29 tudor-like domain
Computational Description
SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT3G27460.1); Has 300 Blast hits to 300 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 107; Plants - 46; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G40550.2

Model type
Protein coding
Short Description
SGF29 tudor-like domain
Computational Description
SGF29 tudor-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT3G27460.1).
Link
InterPro Scan - TAIR