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52-0867-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 52893 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0867-1 - 5-prime edge
    AGGATGATGA TGACTTAGAC AAGGTATTCA CATTGTAATG CTGCAAATTC 
    GATAGCTTCA GAATTGACAT AGACATGAAC AAGGTACTGG TTTTAGTGCT
    TGCAGGCAAT AGCGCTTTCT CTACAGGGCT CTGTTGCAGG AGGCTCTCGT
    ACGAAAAATA CGAGAAGCGA TAAAGAGGCT GCAACTATGA AGAAGAAAAG
    ACAGGGTTTT TTTTTTACAT NAAGTNTTAG NGTNTTACTG TTNCTTAACA
    GNCTAGGAGG ATGNCCTTGA NGNNCATTNG NCTNGTCTNA TTCGTAGGAA
    TTGATGACCA ANATNCANAT GACCCAANAT GAATNGGNCN TGTCCTTNTG
    NCAGTTNGAN GGTAATATNT CNATNGGNCA ATTNCTATCT TTNGGGTTNN
    AANGGTTTTT AACTCCNTTG AGTCTNTGCN ATTTTTGTCA AAAGGGGGAA
    AAGGGTTCNT TNCTCGGAAA NATGNGGCNA AAATGGCANC GGGGCNTGAC
    TTCNCNTGGN CANAAAAGGA ATTACAANAC ATGATTCGTT CCTTTGACAT
    GGCCAAGGAC GGAAAGGNGG GTNCTAAGTT GAAGGTNTTC ACGTTTNTTA
    NANAAACATT TTTGCTAAAC ATNTTTAATT TTGGGCAGCT AANCTGTACN
    ACCGCGTCCC GCGTTCATAA AAAGGCCAGG TTGTTTTNGG ANAAACTANC
    CCTG
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 43666 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0867-1 - 3-prime edge
    ATCATCCTCA CCAAGGAAAA CTGATGTATT CAAAATCTTC CTAGATGAGA 
    CTCTTCTCTT GGATGCAGAG GACTGGTTCT TAAATACAAG TCACAAGAAA
    CCAGAGTAAA GATCAAATGG CACATTAACA TTAAACACAA TTACAAATTG
    CCTTCAAGCC AGAGAGTAAC CATCATTCAC TGCTTCATTC ATCGGATACA
    AGTTGACACA AGCAAAATTG TTACCTTTCT TTTACGAGTT GAATTACACA
    GAAACTCCTC GTCTTCGTTG TAACGCCCGC GATCCTCAAT AGGATCGTTG
    GCTAGGACTT GGTCCGGGAG AAGAAGGTGG AAGTCTCGGA CAAGTGAGAA
    AGAGCTGGCT ATAAGCTCGG ACAAAGGGGA AATCATGCAG GCTAAGCTAG
    GATCGTAAGG AAATCACTTG GGTCAGCTCG CCCAAAGCTC AAGCTCAGCT
    GGAAGGAGTG ACAGTTACTC AGGTCGAGTG ACAGTCCAGC TCGGGCAGCT
    GGACGAGTGA CGGATGAGCT CGAGGTAGCT GGACGAGTGA CGGACGAGCT
    CGAGGTAGCT GGACGAGTGA CGGACGAACT GGGCGGTTAT GGGCGAAGAG
    ATACAACTCT TCGGAAAGGT GCAACTCTTC GGAAGGGCGC AACTCTTCGG
    AAAGGTGCAA CTCTTCGGAA AGGTGCAAGG AACGGATGTG TTGATTCGGG
    AAGCATNCAT TCGCCCC

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR