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52-0812-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74147 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron3 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0812-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CCAAAGAATC TCGTTTGTTT ATAATGAATT 
    TATAAGTTTT GATTTCATTT TTGTTCCCTC GGTATGTGAC TTCTCGCATG 
    CACTTTTTTT TTGGTCANAA AACAATTTCG ACAACAAAAG GAAAATTAAT 
    AAGTGATGTG TTTATCCCCC GGAAATCTAG CTAAACCTAT AGATGCCAAC 
    TGATATAGTT TTGGGGGTAG ATCGTAAGAA AGATAATGAT GAAGTGATGA 
    TGATAACGAN CAAAGTGAGA GGGAGAGGGA GAGAGAGAAA GGAGGAANAG 
    TCGAANAGTG ATNGTTTTTT TTTTTTAAAN GGTTTTTTTN GGGNAAATTT 
    NAAANTTTTN GGGGGGGNCN NAAAAAANCC NAANNNNNTT TTTTTAAAAA 
    ANGGGGNNNN TTNGNAAAAA AAAANNAAAN TTNTCCNNTT GNTTGGTGGG 
    GNAAAAACCC CCCCCAAAAA NNNNNNAAAN NNCCCNTTTN NTTNNNNCCC 
    GTTTTTTAAG GAAAAANNTT TTTNNTTTNT TTAAAAGGGG AANAAAAAAN 
    TTCCCCNATN AANCNTTTTN CCTTNNNNAN TNAGGGGCCA AAANGGGNAN 
    NAAATNNNTN NCNTTTTNGA AAAAAAAAAA AAAANGNGNN NCNNAGGGGA 
    NACCCNCCNT TTAAGGGGGG GNNCCNTTTT TTTCCCCCCN AAAAAACCCT 
    TTNNNGGTTG GNCCAAAAAN NNCNNNTTTT TTTTTTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74194 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron3 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0812-1 - 3-prime edge 
    GGTTTGGAGT GTATATATAA AAGGTTGAAG AAATGAATGG ATAAGGTTTT 
    GTGAATTAGG GTTTTTGTTT TCTTATATAT ATATATGAAG ATGTTGAAAT 
    AAAGAGTAGA AGATGGAAGG TTACGTCTAT TGGCTGGTGG TGGCCGAGGC 
    ATCTCTTGTA GATGATCCAC TGATCTTCCG TTGCGAGTCG CCATAACCAA 
    ATGCTCGTTC GGGTGGTGAG CTGAAGCGTG ATGGCTCATC ATCATGTTCA 
    TGTTTATATT CTGCCCTCCG CTTCGCATTT CCTCCTAATA AATGAAATCA 
    GCAAACTAAT TGGCAAAAAA AACTTAAAAC ACTAATCAAA CCAAACTACT 
    TTGATATGAT GTTTTCGAAA GAAACCCTAG TTAACTAGCC ATTGCCAAAC 
    TACTTAGATC TATCCCGGGA TGCTAACAAA ATTAAACATT TTTGGATTGA 
    GTTTCACAAT TTTGCGTTTC TCGAGAAGAA AAGCCCTAAT TATTACTCTC 
    TGTTTTTTTT ATGAAAGAAC CCTAATTTGT TTCGATGAAT GAAACCCGAT 
    GTACCAAAAG ATTTGGAGGA GGAGGAGGAG GAGGGGGAGG TAAAAAGGAA 
    TGGCCAAGGT TGGAAACGGA TGGAANAANA ANAGCTCTCA TGCTCACNGN 
    CACCGACAAA AGGTTCNAAC AGNGGCCGCA TCTGACCGTC ACCGTCTTGA 
    ACAAACTACT CGGAGGACAC TCNCCTCCAA TTAA

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR