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52-0806-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6758179 [Map]; Strand: w
      • AT3G19490.1 - [+] show detail - sodium:hydrogen antiporter 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0806-1 - 5-prime edge 
    CCGATAGGAA ACACCGCCAT TGGCGAACAC CAGAGAAAGA TACGGAGGGA 
    GAGATTTAAG TAGTGAAGAT GGAGAGGAAG AGAGAGAGCG ATAAAATCTC 
    CGGCCGTCCG GCGATGTAAT GAAATTACCG GTCAAAGTAG AAGTGTGTCT 
    GTGTAGTTTG CAAATATCTT AAATTCTGGG ATTTTACAAT CTAATCCCTT 
    TAAAACAAAA ACAACTACTT TTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6758063 [Map]; Strand: w
      • AT3G19490.1 - [+] show detail - sodium:hydrogen antiporter 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0806-1 - 3-prime edge 
    CATNTCTGNT CCCNCTNTNC ACCGCCGCAT CATTTGACGA AGAGACACGT 
    CATCGCGACT TCATCNCCTA TCTCCATCTC CACCCGATTG CCGCAAAATG 
    TTTCCTTTTC GAAAGTATCT GGAGTGACAG GCTCGACGAG GTTATCCAAA 
    CATGGTGTTC TCGTGAGGGC CGAGGATANT ATTANGAGCT CTTCTTCTCC 
    TTCTTCTCTC GATGAACCAA TCGATGAGGT TCGAGTTTCC ACGATGTTGT 
    CTTAGTACAA AATTCTATTT TGATGATTAC CCATTTTCGC TTTTGATCCA 
    ATCTTAGCTA ATTACTCNTG AACAAGTCNC ATATTTTCTA ATTGGATAAG 
    TTTCATTCAT

AT3G19490.1

Model type
Protein coding
Short Description
sodium:hydrogen antiporter 1
Curator Summary
member of Na+/H+ antiporter-Putative family
Computational Description
sodium:hydrogen antiporter 1 (NHD1); FUNCTIONS IN: potassium:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ antiporter NhaD-like (InterPro:IPR018390), Divalent ion symporter (InterPro:IPR004680); BEST Arabidopsis thaliana protein match is: Na+/H+ antiporter 2 (TAIR:AT1G49810.1); Has 2659 Blast hits to 2653 proteins in 794 species: Archae - 96; Bacteria - 1787; Metazoa - 39; Fungi - 48; Plants - 76; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink).
Link
InterPro Scan - TAIR