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52-0737-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20729575 [Map]; Strand: w
      • AT5G50950.1 - [+] show detail - FUMARASE 2
        Distance: -37; Region: promoter
      • AT5G50950.2 - [+] show detail - FUMARASE 2
        Distance: -37; Region: promoter
      • AT5G50950.3 - [+] show detail - FUMARASE 2
        Distance: -336; Region: promoter
    Flanking Genome Sequence: 52-0737-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTCC ACCATTAGAC AAAGACATTT TAGAACTCCG
    AAAATGTCAA TAAAATGGAT GATGATTATG AGAAAAACTT ACACCGTTTA
    ATAGGCCCGA AGTTGCTATC TAGCAGTTGT AGCCATGGCC GCTTTGACAA
    TGCAGTTTGA AGGAGAGAAG AAAAACGTNT NCGAAGNNGN GGGCGGGCCC
    CCNNGNGNNG AAGANGGGCN NCCNNGAGGG NGGANNNNGG GGGGGGGGGG
    NNGNCCNGGN CGNCGACCAC CNCGNGCCCC TNTAGGGNGN NGNATTAAAA
    GGNGGGGGGG GCNANCCCCC CCNGGCGNGG NNGGGGGGGN TNNTTTTTTC
    NGGGNGGNCN C
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20729567 [Map]; Strand: w
      • AT5G50950.1 - [+] show detail - FUMARASE 2
        Distance: -45; Region: promoter
      • AT5G50950.2 - [+] show detail - FUMARASE 2
        Distance: -45; Region: promoter
      • AT5G50950.3 - [+] show detail - FUMARASE 2
        Distance: -344; Region: promoter
    Flanking Genome Sequence: 52-0737-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTG 
    CACGAGGCTA GTGATGAAAC TGAAGAGACA AGTTTCATTT TTTTTTTTTA
    AGNAANAAAA TTTTTNTTCG ANATTTAAAT TTCANCCAAT CAAAATTANC
    CNCTTNANCT TNTTNTTNAA NCTNTTNTNT NCCCCNTTTN AANGNGTANA
    NCCCCCTGAA AANAAGNGGG GGTNTAAAAA AATTTNTAAA AGCTNCCANC
    CCGGNCNNNN ACCCCCCNNG GCCCTTANAA

AT5G50950.1

Model type
Protein coding
Short Description
FUMARASE 2
Curator Summary
Encodes a fumarase enzyme initially shown to be in the mitochondria through proteomic studies but later shown to be present in the cytosol using an RFP fluorescent protein tag. It appears to be important for the accumulation of fumarate from malate in leaves in the light, and helps to promote nitrogen assimilation under high nitrogen conditions. It does not appear to be necessary for lipid metabolism and seedling growth.
Computational Description
FUMARASE 2 (FUM2); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: nitrate assimilation, response to salt stress, fumarate metabolic process; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: male gametophyte, guard cell, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Lyase 1, N-terminal (InterPro:IPR022761), Fumarate lyase, conserved site (InterPro:IPR020557), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: fumarase 1 (TAIR:AT2G47510.2); Has 20040 Blast hits to 20032 proteins in 2805 species: Archae - 403; Bacteria - 13208; Metazoa - 329; Fungi - 298; Plants - 117; Viruses - 0; Other Eukaryotes - 5685 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G50950.2

Model type
Protein coding
Short Description
FUMARASE 2
Curator Summary
Encodes a fumarase enzyme initially shown to be in the mitochondria through proteomic studies but later shown to be present in the cytosol using an RFP fluorescent protein tag. It appears to be important for the accumulation of fumarate from malate in leaves in the light, and helps to promote nitrogen assimilation under high nitrogen conditions. It does not appear to be necessary for lipid metabolism and seedling growth.
Computational Description
FUMARASE 2 (FUM2); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: nitrate assimilation, response to salt stress, fumarate metabolic process; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: male gametophyte, guard cell, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Lyase 1, N-terminal (InterPro:IPR022761), Fumarate lyase, conserved site (InterPro:IPR020557), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: fumarase 1 (TAIR:AT2G47510.2); Has 20242 Blast hits to 20233 proteins in 2834 species: Archae - 403; Bacteria - 13389; Metazoa - 329; Fungi - 314; Plants - 117; Viruses - 0; Other Eukaryotes - 5690 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G50950.3

Model type
Protein coding
Short Description
FUMARASE 2
Curator Summary
Encodes a fumarase enzyme initially shown to be in the mitochondria through proteomic studies but later shown to be present in the cytosol using an RFP fluorescent protein tag. It appears to be important for the accumulation of fumarate from malate in leaves in the light, and helps to promote nitrogen assimilation under high nitrogen conditions. It does not appear to be necessary for lipid metabolism and seedling growth.
Computational Description
FUMARASE 2 (FUM2); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: nitrate assimilation, response to salt stress, fumarate metabolic process; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: male gametophyte, guard cell, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: fumarase 1 (TAIR:AT2G47510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR