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52-0611-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23368668 [Map]; Strand: w
      • AT3G63240.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: -1076; Region: intergenic
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: 1640; Region: intergenic
    Flanking Genome Sequence: 52-0611-1 - 5-prime edge 
    CTGAAAATAA CCCTATTTGT TTAAACACAA GACAGAAAAA TATATGATCT 
    TGTGGGGTTA ACTTATGGGG GGCAATGCTC TAAGATTTTG CTTTATCTAA 
    CTTTTCAAGA TTATAAAATC GAGTGTTCAC NTTTTAAGAC ATTGTTTGAT 
    GAATTTATGC GATATAATTT TGTAAGGTAA AGTTAAAATG ACACATGCNT 
    GCATGTGGGA GACCGTGTCT GTGTTTGTTC AGTCCAATAC TTAGGTTTAG 
    TAAATTGTGG TTTTATTTTT CTTTCAAAAT GTACATTTTG TACATTTCAA 
    CAGCCATTTT CTTTTTATTT TGTAATTAAA AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23368552 [Map]; Strand: w
      • AT3G63240.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: -960; Region: promoter
    Flanking Genome Sequence: 52-0611-1 - 3-prime edge 
    ATTTTCAGTT TGAAAGTTGA CTCTGCCCAA ACCCTAAGGC ACAGTAATTC 
    AAACCCATCT TATGTTCGTA TAAATTGTAC CATATGTTAC TCTCATATGC 
    TATATATAAG CTAGCATTCA CATCACGTGG ATGGATATAA TATATATGCA 
    ATGTCACATT GTCACATTGT ATCGTTGCAA TAATAAAGTT GGGGGTCTTA 
    TACGTTTGAA ATTAAAAGTT TGATAAAGTA ATAGATGGTC CAAGAGGACG 
    AGGCAGAGTC TCGCATTAGT CTAGATTTTG GGTCAAAAGC ATTTCCTCCT 
    CTTTCCACAC AACAGAACTC AAATTTTATA AAACTCACAT TTTACTAAAA 
    AGTGCCTTGC AAATAAATAT TGGTAAACGT GTTAATTCCC TTTTTCCTAT 
    GATAAAAATA TAAATACGAA TCCAAAAACA TAAAGTGACA ATTGTTGTTG 
    GTGGTGGTCT CCCGAAACCT CAAACTTCAC CCATTAAACA TGCATACATG 
    CATCTACCTT AGCTAACCAA TCCACTCTCT CGTTTTGCTT TTAATAATAA 
    CTAGTAGTAG TATTGTTTCT TGGCGACATA TTCCCAAGAA TTGAGATTTC 
    GTTTTTTGTT TATTGGGTTT GTTCCAATTG CAAAAATCCG GGATTTGTAT 
    TGCGATATAT GGAATGGAAT AAACCAAAAG TGTCTCTTTT TTATATATAT 
    AAAATGGATT GGATTGTACC TCTTATGAAT G

AT3G63240.1

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: CVP2 like 1 (TAIR:AT2G32010.2); Has 2363 Blast hits to 2040 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 816; Fungi - 600; Plants - 662; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63250.1

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
Link
InterPro Scan - TAIR