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Mutant Lines
52-0606-1

52-0606-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 23246095 [Map]; Strand: c
- AT3G62880.1 - [+] show detail - Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 fam...
  Distance: -40; Region: promoter
- AT3G62880.2 - [+] show detail - Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 fam...
  Distance: -40; Region: promoter
- AT3G62890.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -62; Region: promoter

GTCTCAATCT AACAAGTGTA TCAGAAATCG ATTTTAAATA TCAAGTACGA 
TTTTGACAAA ACCGAATTGA ACCGGTATTT AAATGAATAT TTGGTTTCTT 
AATCAATGTA CNGGACGGAG AGGTAACAAA ACAAAAGGGT TTTGTCCTAA 
TTCAATTTTG CAGAGATGGA GGAAGAATTG CTCTCCGCCG TGCCGTGCTC 
TTCCCTAACC GTCGAGTCAG TTCTCCGTGT CGCGACGGTA ATCACTAGTA 
TCCAATTGAA ATTCATGTTT GTGTTAGTGT GTGTATAGAT AGATGTCTGA 
GATTTTTGTT GAAGCTCAGG CCGGTGGATT ATATGGGTTA TGCGCCGGAC 
CTCGTGACGC TCGTAAAATA GGTATTGAAA TTAGCTTTGA TTTAGAGAGT 
TTTTACACTT TTCAATTCAT TAATCTGTGC TTTGTTGCTG ATTTGCTTCG 
CCAGGTTTAA GCGGCGTTTC TCAGGCTTCC TTTGTGGCGA AATCCATTGG 
CAGATTCGGA TTTCAATGCG GTAATTTGCT TCCTCTATTG TTTTTCCNTC 
CNAATTATCT TCANTGACTA TGGAATTTGG GTNTAAATCT GTAATTTTGG 
ACTTAANATA ATTCTNTTNT TTGNCNCTNN NNAAGAATGC CTGCNTATCT 
TTTTTTTTGN TTNNNNNGAN NTNATNNTNT GNNNNGNTNN ANAANAAAAA 
AN

3 prime edge [+] show sequence

Chromosome: 3; Position: 23317509 [Map]; Strand: c
- AT3G63095.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 1251; Region: intergenic
- AT3G63110.1 - [+] show detail - isopentenyltransferase 3
  Distance: 567; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGAAAA AAATAATATA 
TTAAATCTTC TTTTTCTTCG TTTTGTTCCG ACTCAAACTG GTTAATATTT 
TTGAACGGAT TCTATACCTA AAAAGTTGCT GCTATATATT ATCAAACTTT 
GTGGATCGTA TCATATTTGT TTTTTTTTTN NCCTTTTNGN GGGNCCAANA 
AATNGANGGA AAAANCGTNT CATTNATTNG AGGGGTTATA GAAATTTNAT 
TNGTTAANCT NCTTTTTTTT NGTTTTTNAA ANCNCCAAAA CCTAAAANNA 
AAAACCAATG GNGGNNNAAT TTTNANNANN ATTTTNNTTT TTGGNAAAAA 
AAAAAANNNT GGGCTNAAAA ATTNGGGCCC TNAANANCTN NTTNANNAAA 
AAATTTTTNG NNTNTNTNNA NCTNNCCCCN AAAGGTTNNT TTTTTNGTCC 
CAAANNNTNT GGANNANAAT TNAGGGNTNN AANCTNATNN NCANAAGGGG 
GNNACCAGCN AAAATTCCCC CTTNAANNTG GGTAAANNTC CCCCNGTTNA 
AAAANANCAA ATGGTTTTTT TAANCNNGAA ANAAAANCTT NTTTAANTNG 
TCCCANCTTT AANCCCCACN CANCTNNCNC GGNGTTTTTT TTTGGAAATC 
AAANNGTTCC AAAGGGGGGG TAAGNCTTCN TTTTCCAAAT ANAGCNTTCC 
CCNCANAGTC TCNCTTACNT CCAAAAAAGN NAATGATAAT CCTGAATANC 
CGTTTNCCAA AATTTTN

AT3G62880.1

Model type: Protein coding
Short Description: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
Curator Summary: Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.
Computational Description: ATOEP16-4; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plastid outer membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); Has 198 Blast hits to 198 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62880.2

Model type: Protein coding
Short Description: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
Curator Summary: Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.
Computational Description: ATOEP16-4; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plastid outer membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62890.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G40405.1); Has 35241 Blast hits to 13566 proteins in 229 species: Archae - 0; Bacteria - 18; Metazoa - 37; Fungi - 30; Plants - 34726; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63095.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a Protease inhibitor/seed storage/LTP family protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); Has 80052 Blast hits to 23701 proteins in 1517 species: Archae - 357; Bacteria - 20846; Metazoa - 15827; Fungi - 6834; Plants - 3473; Viruses - 635; Other Eukaryotes - 32080 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63110.1

Model type: Protein coding
Short Description: isopentenyltransferase 3
Curator Summary: Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.
Computational Description: isopentenyltransferase 3 (IPT3); CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 5 (TAIR:AT5G19040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR