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52-0596-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25831285 [Map]; Strand: w
      • AT5G64610.1 - [+] show detail - histone acetyltransferase of the MYST family 1
        Distance: -761; Region: promoter
      • AT5G64620.1 - [+] show detail - cell wall / vacuolar inhibitor of fructosidase 2
        Distance: -549; Region: promoter
    Flanking Genome Sequence: 52-0596-1 - 5-prime edge 
    TTCACATGTA AACACGTTAT ATACTTATAT GGCAACTTGA CTAAAGGGAA 
    AATTTAAATA AAATGATTTA ATTTGGTGAC ATATATTCAT CTTTCTAATT 
    TTTGTAGCTA CTACACACCG TGTATCTTTT TTTCATAATA ATGATGTGAA 
    ATTGTATAAT TGTAAGAAAA AATGAGAAAA GAGTGACGAA ATCTTTAAAA 
    CAGACAGAAT TTTTTTGGTT GAGCAAACAA AACTTAGTTA TCAAATTTTG 
    GAAATAACGT GTTGAAGTGG CTGATTCTTT TACCTACAAT GATTGATTCA 
    TCGACAAATA TCTTGTTCTA TATATCATCA ATTCTAAATT CTTCAAAAAC 
    AAAGTAAAGA TACTCAAATG TAATGAAATG ACGAAGCTGG AAAAACGTAT 
    TTTAATTTAA TTCATTATTT GACCAACAAT TTGCATCATG TGAATTTAAA 
    TCTTGATAGG TCAATATTAG TATAAACTAC CACACTACAT GCGAAAATCA 
    TTCCTCATTT AGTGCAATTA CAAATGATAA ACGGAAACGT TATCATTTGT 
    ATTTATTTTG TAAAATATGT AATTCAAGAA ACTGCTCAGA ATATAAAGAC 
    AAGAATCCTC TTTCTTCCAT CTCTATCTCT CCGTAAACAG TTGCTCAAAC 
    CTTCTTNCTG AAATGGCTTC TTCTCTCATC TTCCTCCTCC TCGTTACCCT 
    AACCTTTTCA GCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25831211 [Map]; Strand: w
      • AT5G64610.1 - [+] show detail - histone acetyltransferase of the MYST family 1
        Distance: -687; Region: promoter
      • AT5G64620.1 - [+] show detail - cell wall / vacuolar inhibitor of fructosidase 2
        Distance: -623; Region: promoter
    Flanking Genome Sequence: 52-0596-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    CAACTAAAAT AGGAATCAAT TCTATTTTTC TTCATTCGAA TTTCAAAAGT 
    AAGCAAGTCA TCCACTTCAA TTCATAACCG AAAAATAAAA GTAAATTGAT 
    AGTACGTAAA AGTAAAACAT TCTTTAAAAA AAATGAGATG TAAAATTTCA 
    CATACAAGAT ACAGTAAAGT GACCATGTGA ATCTTTTTTG TTCATAAAAA 
    ATCATTTTGG TTAATCTAGA GGAACATGGT GTGCGAATCT ATGACCATAA 
    CTTCAAGGAC ACGATGATGA GTTGTGTTTT TCGTCTTTGC TTCTTGGAAC 
    TTTGTGATTT TTTGATCTGT GAATCTTGTG ATTAGTACGA ATCATAAAGC 
    CTTGTTTGGC TGTTTCCCAT TCACGACAAA ATACTGACTC TGTCACTTAT 
    TATTTATCTC TCATTATCTC TTTAGTTTTT ATAAATTGTT TGCTCCTACT 
    AATCATTCTT TAAATGTAAC CTGGCGATTA TAAAACTAAA CATAAGCCAA 
    CAGTTATAAA ACGTGTATTA ACGACGGTAA GAGATTTTTT GCACCCAAAA 
    AAAAAGGACG GTAAGAGAGA CATATAGTAC AGGCCAATTA TAAAGATAGG 
    CCCAATTGAG CATTCAAAGT TGTTATTGGG CCACACTCCT TCCAAATGAT 
    GTTCTTTATC CGTATGANAA AAGAATCCAC CCCGGAAAAA TCTCCGACCC 
    GACTAAAGAA ATGGGATCGT NTGCGAATAC AGAN

AT5G64610.1

Model type
Protein coding
Short Description
histone acetyltransferase of the MYST family 1
Curator Summary
Encodes an enzyme with histone acetyltransferase activity. HAM1 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM1. HAM1 acetylates histone H4 lysine 5.
Computational Description
histone acetyltransferase of the MYST family 1 (HAM1); FUNCTIONS IN: histone acetyltransferase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Chromo domain (InterPro:IPR000953), MOZ/SAS-like protein (InterPro:IPR002717); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the MYST family 2 (TAIR:AT5G09740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64620.1

Model type
Protein coding
Short Description
cell wall / vacuolar inhibitor of fructosidase 2
Curator Summary
Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.
Computational Description
cell wall / vacuolar inhibitor of fructosidase 2 (C/VIF2); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: cell wall / vacuolar inhibitor of fructosidase 1 (TAIR:AT1G47960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR