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52-0379-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8146915 [Map]; Strand: w
      • AT5G24090.1 - [+] show detail - chitinase A
        Distance: -1663; Region: intergenic
      • AT5G24100.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -1701; Region: intergenic
    Flanking Genome Sequence: 52-0379-1 - 5-prime edge 
    GTTGCATGTG CATACCATAT ATAGACTTTA AATATACTCT CATATATAGG 
    CTCATATAGC ATAAAAGGTC CTTATCTTAA TAAAGTTTTC TGCTTTCTCC 
    CCTAATTTTT ATGTTGGAAA AGCATTGCAA TTTTAGCGTT AAGACATTTC 
    GCATCGTGGT TCATGTTTAA ATTGTTATAT GTGAATATTC AAATTCATGC 
    ATAATATATC TAAGAGCCGT GCCTATTTGA TAGAATTAGA AACACTCGCC 
    TACGGCATTC ACTTTCTTAT AAAATTTACA TAGGCATATT TATTAGATAT 
    TTAATGTTAT GTTGTTTATA TGTAAGATTG CTTGTTATGG TTTTTTGTTC 
    TTGACCTTAA ATGATCGTCA TTAAATCAAA ATTAATCCAC CCATCTTCTT 
    TTACCAAAAA AAAAAANNNN CCNTNTTTNT TTTAAAAATT TGNANNATTA 
    AATTTGGGGT TNNTTTTTNC NAANNACCAN GNGGNGGTCC CACNNNNTGN 
    ATTNTTNNCN TTNANNACCT NNGTTTAAAA AAATTTTNNC NAAAGTTTTT 
    TTTTNTNCNN NTTAAAANCN NAAAANAGTT TNGNAAATTT NGAATTTCCN 
    NTTTTNTNNN TAAGGTTNAA ATTTNTTTTG GACCANTAAC AAAAAAATTN 
    ATGGTTAAAT TTNGACTNNA ANNNCGGNTT TNNTTTTTNA AAATTTTTTN 
    ANCCCCTAAA ANATTTTNTT ATTTGATTT

AT5G24090.1

Model type
Protein coding
Short Description
chitinase A
Curator Summary
Chitinase A (class III) expressed exclusively under environmental stress conditions.
Computational Description
chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24100.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G53320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR