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52-0360-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22239806 [Map]; Strand: w
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 3275; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 349; Region: intergenic
    Flanking Genome Sequence: 52-0360-1 - 5-prime edge
    GTGTAATGTA TTTCCTTTTG CTGATTTATA GAAGAACTGA TAACTTCCGT 
    TTGAACCGTT AAACTATTGA TCCCACCGTT GAATCTTTAG CTGATAGTCC
    CACGAAGATT TTGTCCGAAT TTTAGTCAGA TCAGATATTG CCTGAGGCTT
    CTACCGTCTT ATGAAGTTGC TGTGACAAAG TGAATATTTC TTCCTTTGCT
    ATATTTGTTT TTTGGTTTCG GTTGCTCTGG TAGCAACATA CGATCCTCAG
    TGAATATAGG AGGCAGTATC CAGTGATGCT TACTCTTTGG CTGACTTCTG
    GTGATCTTTC TTTACTTCTC TTTCCTTTGA ATTTTCATTA CACGACATGT
    TTTTGTGAGA TCTGAACAAC GTTTTGTGAT TAAGATAAAG CAGAAGCTCT
    CCAAGGCGAG GAAGGGACAA TTTTTCTTAG ATATATGTTA AGACGAGCCG
    ATTGTAGATG AAAGACGAGC TTGAGGCCGG AAGACGATCT TGATGTCCGA
    GTAAGAATAG AGTTTATTCG TCTTATAGCT GAACCTTGTA AAAGGTTGCC
    TACGTACCCT TAGAAAGGGA TCAAGCCACA CGTAGTTCAT ATCGTGATAA
    ACAAGCTAGG CCATTACTGG AGGAAGGTCG TATGGTAGGT GACGAGCCGG
    CAGATGTGCG ACGAGCTGGA TGAACCGTGG TAGAGGCCAA TTGGACAAAC
    CGAGTTCTGC TGAAGGTTA
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22239735 [Map]; Strand: w
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 3204; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 420; Region: intergenic
    2. Chromosome: 2; Position: 4225322 [Map]; Strand: c
      • AT2G10735.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0360-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCCAACAAG TGACAATGGA TCATCACTAG CAATCGCTCA AGGTTTCCAC
    TCATTCATCA ATGATGCGAT CTCCAATTCT GTCTCGACGA CCTCCCTCAT
    AAAAGATAAG TTCAATTACT TTCTTACATA TTAATTAAGC T

AT2G10735.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G60170.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT3G60176.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR