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52-0358-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3107150 [Map]; Strand: w
      • AT3G10070.1 - [+] show detail - TBP-associated factor 12
        Distance: -335; Region: promoter
    Flanking Genome Sequence: 52-0358-1 - 5-prime edge 
    GTCAAAGTCT CTGGTCTTTT TCTCACATAC TCAAGAGTAC ACAGCGATCA 
    AATTAGCTAG TGTCACGACA AATTGGAGAT TTGTTTGCAG CCTTTAGAGC 
    CTTATAGCAA AGAAGAACTT GGCATTGATT TTGATATATT TTGTGGATTG 
    GAGAAGATAT TGTCAAATTT TCAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3107034 [Map]; Strand: w
      • AT3G10070.1 - [+] show detail - TBP-associated factor 12
        Distance: -219; Region: promoter
    Flanking Genome Sequence: 52-0358-1 - 3-prime edge 
    ACTTTGACAC TAGTTAACTT GGAAGCTACA TTTCCAGCAA TAGAAGAAAC 
    TTGCTATCTG AGCATAATGA AACGCTGCGT TTTAACTCTC ATTTATTCTT 
    TGGGGTTAAA CTCATCGTTT TAATCACACA ACAGAGAAAA GGAATTGTTA 
    AAGCCGGTCC GGTATTAATA ATTATCGAGC TTTGCAGTTT CGGTTCACTT 
    GTTTAATACC GTACCGACAA TTTCGGTTTA ATTAGATTTC TATATACTCA 
    ATCAATATCT CTATTCCCTC CACATTCACA ACCTTTTCAT GGATCAGCCA 
    CGGCAAAGCT CGACGGCGTC TCAGCCACCG GAAACACCTC CTCAGCCGTC 
    GGATTCGAAA CCATCGACTT TAACACAGAT TCAACCAACG CCTTCCACAA 
    ATCCGAGTCC CTCCTCCGTT GTTTCCTCTA TTCCCTCTTC CCCAGCTCCA 
    CAATCACCAT CGCTCAATCC AAACCCTAAT CCTCCTCAAT ACACGCGTCC 
    GGTGACATCT CCGGCGACGC AACAGCAGCA ACATCTCTCC CAGCCTTTAG 
    TACGGCCGCC TCCGCAGGCG TACTCTAGAC CATGGCAACA ACACTCCTCT 
    TACACTCACT TCTCCTCCGC TTCGTCGCCA TTGTTATCTT CCTCATCAGC 
    GCCAGCCTCT TCGTCTTCGT CTTTACCTAT TAGTGGGCAA CAAAGAGGTG 
    GTATGGCGAT TTGGCGTTC

AT3G10070.1

Model type
Protein coding
Short Description
TBP-associated factor 12
Curator Summary
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.
Computational Description
TBP-associated factor 12 (TAF12); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: chloroplast, transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIID subunit A (TAIR:AT1G17440.2); Has 50598 Blast hits to 32470 proteins in 1374 species: Archae - 31; Bacteria - 3770; Metazoa - 21452; Fungi - 11498; Plants - 4385; Viruses - 864; Other Eukaryotes - 8598 (source: NCBI BLink).
Link
InterPro Scan - TAIR