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52-0331-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 130470 [Map]; Strand: c
      • AT2G01240.1 - [+] show detail - Reticulon family protein
        Distance: -1214; Region: intergenic
      • AT2G01250.1 - [+] show detail - Ribosomal protein L30/L7 family protein
        Distance: 2227; Region: intergenic
    Flanking Genome Sequence: 52-0331-1 - 5-prime edge 
    TTATNNAAAA ANCAAAATCG GTTTTTCGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTN TAATAGTTCG TGTCTTATGA AGTAATAAAG 
    TGTTAGGTTC AAAATTATTG ATCTTTTTAG TAATTTAGAA ACCAAAAATT 
    TAATTATAAA AAGATATATA TTATATTTAA CTACNTTATT CTTTCGTAAA 
    AATATGGAAT AACCAAAAAA ATTGTGTTCA AACCGGAACC AAGCCGAGAT 
    ATATATGGTT TTTGTATGGT TTCAATATTT ATAAATTCGA AAAACAATAG 
    AACTATAAAA ATCGAACCGT AACCAANACG AATTATGTAT GGTTTCTATA 
    TAGTTATAGT TTTAATAAAA CTAAAAAATC GTAAAACCAA AAATTCTGAA 
    TCGAAACCAA ACCGAAAAAC CGTAAGCCCA TCCCTAAGCA AAACCTTATA 
    TAAACAAAAT GAAACAAAAT GAAGAGCTGG ATAGAAGTAA TGAGAAAGAA 
    AATCTTGTTT GCGAAATAGA CAAATAAATA TTTAATTAGG AAACTAGAAA 
    GTNATATTTT TTTTTNNCCC CNNNGGNTTT TNNTTTGGGG CTTTANTTTA 
    AATTTGGNTT TCCCCCTTTT TGNNCTTTTT NGGNGGGGTN TACNNANTTG 
    AANNNGGNAC CAACTTNCNA TNGGAANCNT ATTNNTTATT TTGNTTTTTT 
    CCNATNNTTT GTNNGNCCNG GAATTTGGTT AANNTCTNAN CANTNGTTTT 
    TNTTTTTTTN NCTNNCNATG GGTAAATTAA TAAANCCNCA NAAAAAAAAA 
    AAAAAANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 126259 [Map]; Strand: c
      • AT2G01220.1 - [+] show detail - Nucleotidylyl transferase superfamily protein
        Distance: 0; Region: exon12 (3UTR)
      • AT2G01220.2 - [+] show detail - Nucleotidylyl transferase superfamily protein
        Distance: 0; Region: exon12 (3UTR)
    Flanking Genome Sequence: 52-0331-1 - 3-prime edge 
    CTACTAATGA CTTCTCAACC CGCTTGAAAG TCTTGGNTCG CAAGACAATT 
    TATTTAGTGC AGTTACTCTA TGATNCTCCA CTAGGCGNAC GG

AT2G01220.1

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.2); Has 432 Blast hits to 425 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 78; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01220.2

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.1); Has 429 Blast hits to 422 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 76; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01240.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 2 (TAIR:AT4G11220.1); Has 375 Blast hits to 375 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01250.1

Model type
Protein coding
Short Description
Ribosomal protein L30/L7 family protein
Computational Description
Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1297 Blast hits to 1295 proteins in 388 species: Archae - 210; Bacteria - 1; Metazoa - 453; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR