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52-0283-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269324 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0283-1 - 5-prime edge
    TTTCTCCTCN AACATTGTTC CGCGGAGGCG ATAACATCGG CTGATGGAAA 
    TTATTGTTCC GCGCGGCGAG GACAACGCCG TTACTCTCGA GTTTGGAATC
    AATTGCGTTT TCGATTGACT CGATGTGCTT CTGAATATCA TCGAATTGGC
    GTTTGAATGT TTCCACTGCA ACTGAAAACG CAGCTAATTC GTCTATGGAT
    TTCAAAAATT GAGGCTGCTT AGATTGACCG ATCGTAATGT CCATACTTGT
    AGACTCTGTT TCGACAATCT NTGNTTCTCC TCTAAAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269440 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0283-1 - 3-prime edge
    GTGGGAAACN GCCGTCACTG TGAGCCAGCC GTCTCAGGAG ATTGTNCCGG 
    AGACGTCGAA TAANCCGGAG GGGGGACGTA TGTGTGAGTT GATGTGTAGC
    AAAGGTCTGC GTAAATACAT ATACGCGAAT ATCTCTGNTC CTCCTCTATN
    AATGGAAGAG ATTCCTTCAN CTTTGAAATT GG

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR