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52-0209-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8453391 [Map]; Strand: w
      • AT1G23920.1 - [+] show detail - transposable element gene
        Distance: -809; Region: promoter
    Flanking Genome Sequence: 52-0209-1 - 5-prime edge 
    NAAATGGNCT NGTGGATGAT GCCTTCAAGG TGCTCGACGA AATGCTTCAG 
    AAAGAATCTG TTTTTCCTCC TAATAGAATC ACAGCGGATA TTGTGTTACA 
    CGAGGTTTGG AAGGGAAGGC TTTTGACAGA AGAAAAGATA ATTGCTTTGA 
    TTTCNAGATT TAGCTCGAAC TTTTATCACT TATGCCACTT TTTTGAAAAA 
    ACTGATCTGG ACTGCCATCA GTTAATCTGA ATGCCACCGA AAATGTGATA 
    TACCAGTTGT ACCCTTAATG AGTTGATTAA AAAAATGAAA AAGAAATTCA 
    AAAGCTAAAT AAAGAAAATC GAGTTCCTCT TCGTCGTCGT GTTCTTCTTC 
    TCTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22770730 [Map]; Strand: c
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0209-1 - 3-prime edge 
    TCCATTTCTT AGCAAGACGT CTACCACAAC ATTACGAACC TGCGAGTTTT 
    TCATATTCGA ATCGAGTCTT TCGTATACAA GAACCGACTG ATTCACCATA 
    CCCATACGCC CAAACCATCG GATCAGAAGA TTAGTGGCAA CGACAGTAAG 
    AGGGATGTTC TTCTCTTTGG CGATCTCGTA GAGACGGAGA AGTTTATCAC 
    GCGGGTCCGG TTCACTACCG GCGAATT

AT1G23920.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 3.6e-77 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR