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52-0049-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19328537 [Map]; Strand: w
      • AT3G52120.1 - [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-pa...
        Distance: -174; Region: promoter
      • AT3G52120.2 - [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-pa...
        Distance: -174; Region: promoter
    Flanking Genome Sequence: 52-0049-1 - 5-prime edge 
    GCTATAACTA TATCAATATG AACTGTTTAC GCATGAATCA ATCATACAAA 
    CACAAAAAGC ATAGGAAATT AATCATGCGG TCTANAAAAA TGTGTAAATA 
    CAAACAAATA TG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19328421 [Map]; Strand: w
      • AT3G52120.1 - [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-pa...
        Distance: -290; Region: promoter
      • AT3G52120.2 - [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-pa...
        Distance: -290; Region: promoter
    Flanking Genome Sequence: 52-0049-1 - 3-prime edge 
    GTTATAGCTG ATATCTGCCA AGATTTGAAG TTAGTATCTT AGTAGCATGA 
    ATGTGTTTGT ATTGTATCTT GAAGATCACA AAAGCATAGG GAATTGACTT 
    TAAATCATTG ATAAATAACT TATCACAAGA GTTTTAGTTG ACATTTTCTT 
    CGAGAAAGCA GAGAAAAACT TTATTGTATA GTCTTTCGAT CCAAAGAACG 
    TAGATGCAAA GAATGTCAAG ATACAGAATT ACATTTCGGA TTCAAACCCG 
    ATGTTCCAAA ACCCTTCAGG AGTCATTGGA GGAGCGTATC TGTAACGATG 
    CCTCGACACA CCTTCATGAT GTTCACATCT CAAGCT

AT3G52120.1

Model type
Protein coding
Short Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein
Computational Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), D111/G-patch (InterPro:IPR000467); Has 1460 Blast hits to 1340 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 1005; Fungi - 124; Plants - 274; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G52120.2

Model type
Protein coding
Short Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein
Computational Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), D111/G-patch (InterPro:IPR000467); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR