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16-2741-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71999 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 16-2741-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CTCGGATTCA TTTCACCTTT TTTACGTTTT 
    CGATTCTCCG AATTGAACCG TCGTTGTTTG TTTGGGTAAC CTCTGTTATA 
    ATTTGTGTTG TTGTTGGTGG TGAGAAGTTG AGTTGAAGAA ACAAAGTTCG 
    TGTTCGATGC AATTGACCAA CAAGACAACT ACTCAATGTG TCGCTTTTAA 
    GGTCTTTTAC ATTCTCTTCT TACAATTCTG TCTTATTAGT ACACATTGAG 
    AGAGTGTTGA TGTTAATTGA GAGACACACA GGTTAAAACA ACCAATCCTC 
    GCAAATACTG TGTTCGTCCT AACACTGGTG TTGTCTTGCC CGGTGATTCC 
    TGCAATGTTA CAGGTTCTTA AAACCATTTC TTCTTTCATT CAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 72045 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-2741-1 - 3-prime edge 
    CGGGCGAGAG GGATCAAATC AATCGGAAAA AAAAANCTTN CAGGGGAATT 
    TAANCTCAGT AGGATGGATN TTANCNANAT CTCCGGNCGT CATNCTTNTT 
    TGTAAATCCT TCNAAATTGA AATTNGATTT CTCTGTTTTT TTTTTNGGGT 
    TNCCNNCNGG NAAAAAAAAA NNGAAANTCA ACCAANTTTT NNTTTNGGNC 
    AAAAAAAAAA AAANGGNANT AANTTTTTTT TTNNCCCAAA ACNGGAAAAT 
    TTTNGNNNTT TAAAATTTNA AANCCCCCNT ACCTAANTTN NCCAANCCCC 
    NNTNGCCCGG NNTTTTTTNA NNNCNTTACC GGTTACCCCA NNAAANNNAN 
    GGNTTTNGTC CCCNGCCNNA ANNANCCCCN CCAAAANGGN TCCCCACCCN 
    GGNCCGNNAN CCCCCCNNNC CCTTANAA

AT4G00170.1

Model type
Protein coding
Short Description
Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description
Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR